RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 MYMKA6NI61 221 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 SHISA7A6NL88 538 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 ADSSP30520 456 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 FZD5Q13467 585 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 ALCAMQ13740 583 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 VEPH1Q14D04 833 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 SV2CQ496J9 727 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 SLC39A12Q504Y0 691 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 ARHGAP15Q53QZ3 475 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 L1TD1Q5T7N2 865 aaKnown RBP20.23■□□□□ 0.83
CLN3-218ENST00000565688 C1orf228Q6PIY5 440 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 CRELD2Q6UXH1 353 aaPredicted RBP20.23■□□□□ 0.83
CLN3-218ENST00000565688 ATRIPQ8WXE1 791 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 RUBCNQ92622 972 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 DNAJC19Q96DA6 116 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 MSANTD3Q96H12 275 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 CLIC6Q96NY7 704 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 TMEM209Q96SK2 561 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 PYM1Q9BRP8 204 aaKnown RBP20.23■□□□□ 0.83
CLN3-218ENST00000565688 OLFML3Q9NRN5 406 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 F5P12259 2224 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 DMXL1Q9Y485 3027 aa20.23■□□□□ 0.83
CLN3-218ENST00000565688 OTOGLQ3ZCN5 2332 aa20.22■□□□□ 0.83
CLN3-218ENST00000565688 PNPLA4P41247 253 aa20.22■□□□□ 0.83
CLN3-218ENST00000565688 CEBPZQ03701 1054 aaKnown RBP20.22■□□□□ 0.83
CLN3-218ENST00000565688 MAMSTRQ6ZN01 415 aa20.22■□□□□ 0.83
CLN3-218ENST00000565688 ZNF687Q8N1G0 1237 aa20.22■□□□□ 0.83
CLN3-218ENST00000565688 CSGALNACT1Q8TDX6 532 aa20.22■□□□□ 0.83
CLN3-218ENST00000565688 FAM3CQ92520 227 aa20.22■□□□□ 0.83
CLN3-218ENST00000565688 ZNF560Q96MR9 790 aa20.22■□□□□ 0.83
CLN3-218ENST00000565688 SEPT5Q99719 369 aaPredicted RBP20.22■□□□□ 0.83
CLN3-218ENST00000565688 HINFPQ9BQA5 517 aa20.22■□□□□ 0.83
CLN3-218ENST00000565688 FAM126AQ9BYI3 521 aaPredicted RBP20.22■□□□□ 0.83
CLN3-218ENST00000565688 ATXN3LQ9H3M9 355 aa20.22■□□□□ 0.83
CLN3-218ENST00000565688 PRMT8Q9NR22 394 aaPredicted RBP20.22■□□□□ 0.83
CLN3-218ENST00000565688 ZSCAN32Q9NX65 697 aa20.22■□□□□ 0.83
CLN3-218ENST00000565688 NDRG2Q9UN36 371 aaKnown RBP20.22■□□□□ 0.83
CLN3-218ENST00000565688 TSC2P49815 1807 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 KPNA7A9QM74 516 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 ARNTLO00327 626 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 CHADO15335 359 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 GCNT3O95395 438 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 LDHAP00338 332 aaKnown RBP20.21■□□□□ 0.83
CLN3-218ENST00000565688 STAT6P42226 847 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 ID4P47928 161 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 FCHO2Q0JRZ9 810 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 MTAPQ13126 283 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 PPP2R5DQ14738 602 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 SLC39A14Q15043 492 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 FAM173BQ6P4H8 233 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 GAREM2Q75VX8 874 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 ARID3BQ8IVW6 561 aaPredicted RBP20.21■□□□□ 0.83
CLN3-218ENST00000565688 EFCAB13Q8IY85 973 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 TTC9BQ8N6N2 239 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 SUMF1Q8NBK3 374 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 ZBTB44Q8NCP5 570 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 FAM200AQ8TCP9 573 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 SPPL2BQ8TCT7 592 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 FAM213AQ9BRX8 229 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 IKZF4Q9H2S9 585 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 CHRDQ9H2X0 955 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 ZSCAN16Q9H4T2 348 aaPredicted RBP20.21■□□□□ 0.83
CLN3-218ENST00000565688 TBC1D7Q9P0N9 293 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 ANK1P16157 1881 aa20.21■□□□□ 0.83
CLN3-218ENST00000565688 DPYSL4O14531 572 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 SOAT2O75908 522 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 IDEP14735 1019 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 GARTP22102 1010 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 GABRR2P28476 465 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 WEE1P30291 646 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 KCNA1Q09470 495 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 MGAT5BQ3V5L5 792 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 WSCD1Q658N2 575 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 ERMP1Q7Z2K6 904 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 DCP1BQ8IZD4 617 aaKnown RBP20.2■□□□□ 0.82
CLN3-218ENST00000565688 SYCP3Q8IZU3 236 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 CACTINQ8WUQ7 758 aaKnown RBP20.2■□□□□ 0.82
CLN3-218ENST00000565688 NELL1Q92832 810 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 GCNAQ96QF7 691 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 C8orf33Q9H7E9 229 aaPredicted RBP20.2■□□□□ 0.82
CLN3-218ENST00000565688 OBP2AQ9NY56 170 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 ZMYM5Q9UJ78 669 aa20.2■□□□□ 0.82
CLN3-218ENST00000565688 COL4A2P08572 1712 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 SCN1AP35498 2009 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 FRMD3A2A2Y4 597 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 CDC25CP30307 473 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 TFAMQ00059 246 aaKnown RBP20.19■□□□□ 0.82
CLN3-218ENST00000565688 TAF12Q16514 161 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 STXBP5Q5T5C0 1151 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 GPR158Q5T848 1215 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 BRSK2Q8IWQ3 736 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 RSPRY1Q96DX4 576 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 USP28Q96RU2 1077 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 MKNK1Q9BUB5 465 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 TASP1Q9H6P5 420 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 PANK4Q9NVE7 773 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 MTMR6Q9Y217 621 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 NCANO14594 1321 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 TICRRQ7Z2Z1 1910 aa20.19■□□□□ 0.82
CLN3-218ENST00000565688 CACNA1AO00555 2505 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms