RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.21□□□□□ -1.74
VPS35-203ENST00000562420 TBCCD1Q9NVR7 557 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 ETAA1Q9NY74 926 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 KLHL42Q9P2K6 505 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 NAP1L2Q9ULW6 460 aaPredicted RBP4.21□□□□□ -1.74
VPS35-203ENST00000562420 SLC45A2Q9UMX9 530 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 CDYLQ9Y232 598 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 MAP3K2Q9Y2U5 619 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 AATKQ6ZMQ8 1374 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 ZNF785A8K8V0 405 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 H3BUI4 141 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 SUN1O94901 812 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 ZFPL1O95159 310 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 THP07101 528 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 ZNF135P52742 658 aaPredicted RBP4.2□□□□□ -1.74
VPS35-203ENST00000562420 USP14P54578 494 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 DYRK1AQ13627 763 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 GBX1Q14549 363 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 MLC1Q15049 377 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 LRRC41Q15345 812 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 GFOD2Q3B7J2 385 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 CCDC157Q569K6 752 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 TAPT1Q6NXT6 567 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 MICALCLQ6ZW33 695 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 OVCH2Q7RTZ1 564 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 SRGAP1Q7Z6B7 1085 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 DAAM2Q86T65 1068 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 KIAA0319LQ8IZA0 1049 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 LCORLQ8N3X6 602 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 ZBTB34Q8NCN2 500 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 SLC17A8Q8NDX2 589 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 PLBD2Q8NHP8 589 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 KBTBD7Q8WVZ9 684 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 OSBPL9Q96SU4 736 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 IMPG2Q9BZV3 1241 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 CYP4F11Q9HBI6 524 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 CNNM1Q9NRU3 951 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 INTS13Q9NVM9 706 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 PIH1D1Q9NWS0 290 aaKnown RBP4.2□□□□□ -1.74
VPS35-203ENST00000562420 RGS17Q9UGC6 210 aaPredicted RBP4.2□□□□□ -1.74
VPS35-203ENST00000562420 PACSIN3Q9UKS6 424 aa4.2□□□□□ -1.74
VPS35-203ENST00000562420 TRGV11A0A075B6L2 103 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 UNC119BA6NIH7 251 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 POLRMTO00411 1230 aaKnown RBP4.19□□□□□ -1.74
VPS35-203ENST00000562420 PRPF3O43395 683 aaKnown RBP4.19□□□□□ -1.74
VPS35-203ENST00000562420 CTNND1O60716 968 aaKnown RBP4.19□□□□□ -1.74
VPS35-203ENST00000562420 RAMP2O60895 175 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 ESRRBO95718 433 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 GCP02774 474 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 ARFIP2P53365 341 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 SOX8P57073 446 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 GEN1Q17RS7 908 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 LAIR1Q6GTX8 287 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 CHST15Q7LFX5 561 aaPredicted RBP4.19□□□□□ -1.74
VPS35-203ENST00000562420 GPR149Q86SP6 731 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 SUPT20HQ8NEM7 779 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 SNX19Q92543 992 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 TNPO1Q92973 898 aaKnown RBP4.19□□□□□ -1.74
VPS35-203ENST00000562420 ZNF622Q969S3 477 aaKnown RBP eCLIP4.19□□□□□ -1.74
VPS35-203ENST00000562420 MRGPRX1Q96LB2 322 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 LRGUKQ96M69 825 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 TRIB1Q96RU8 372 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 DPH1Q9BZG8 443 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 PDCL3Q9H2J4 239 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 WDR26Q9H7D7 661 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 FAM204AQ9H8W3 233 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 RSAD1Q9HA92 442 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 PRDM11Q9NQV5 511 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 KCTD5Q9NXV2 234 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 ANKFY1Q9P2R3 1169 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 ING1Q9UK53 422 aaPredicted RBP4.19□□□□□ -1.74
VPS35-203ENST00000562420 G3BP2Q9UN86 482 aaKnown RBP4.19□□□□□ -1.74
VPS35-203ENST00000562420 DMTF1Q9Y222 760 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 PLEKHM1Q9Y4G2 1056 aa4.19□□□□□ -1.74
VPS35-203ENST00000562420 CAPN8A6NHC0 703 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 PHGDHO43175 533 aaKnown RBP4.18□□□□□ -1.74
VPS35-203ENST00000562420 ITGAMP11215 1152 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 PIM1P11309 404 aaPredicted RBP4.18□□□□□ -1.74
VPS35-203ENST00000562420 TYRP1P17643 537 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 VIPR2P41587 438 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 SEC24CP53992 1094 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 CACNB3P54284 484 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 PSMC1P62191 440 aaKnown RBP4.18□□□□□ -1.74
VPS35-203ENST00000562420 MPP3Q13368 585 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 NBPF8Q3BBV2 869 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 CRB2Q5IJ48 1285 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 KHDC1LQ5JSQ8 128 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 HECTD2Q5U5R9 776 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 FAM160B1Q5W0V3 765 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 KIAA0895LQ68EN5 471 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 MAEAQ7L5Y9 396 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 MTERF4Q7Z6M4 381 aaKnown RBP4.18□□□□□ -1.74
VPS35-203ENST00000562420 USP37Q86T82 979 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 ADGRG5Q8IZF4 528 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 CHFRQ96EP1 664 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 MOGAT1Q96PD6 335 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 HEPHQ9BQS7 1158 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 B3GNT5Q9BYG0 378 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 TRIM54Q9BYV2 358 aa4.18□□□□□ -1.74
VPS35-203ENST00000562420 VSX1Q9NZR4 365 aaPredicted RBP4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms