RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 FAXDC2Q96IV6 333 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 B3GALT6Q96L58 329 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 SPAG5Q96R06 1193 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 TGS1Q96RS0 853 aaKnown RBP10.28□□□□□ -0.76
CUX1-216ENST00000558469 MRPL45Q9BRJ2 306 aaKnown RBP10.28□□□□□ -0.76
CUX1-216ENST00000558469 C17orf80Q9BSJ5 609 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 STK33Q9BYT3 514 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 TTYH3Q9C0H2 523 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 CYP3A43Q9HB55 503 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 CISHQ9NSE2 258 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 FBXL5Q9UKA1 691 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 CAPN11Q9UMQ6 739 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 RWDD3Q9Y3V2 267 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 DAAM1Q9Y4D1 1078 aa10.28□□□□□ -0.76
CUX1-216ENST00000558469 PTPRDP23468 1912 aa10.27□□□□□ -0.76
CUX1-216ENST00000558469 CHD9Q3L8U1 2897 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 ARHGEF37A1IGU5 675 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 RNF225M0QZC1 329 aaPredicted RBP10.27□□□□□ -0.77
CUX1-216ENST00000558469 FOXN3O00409 490 aaPredicted RBP10.27□□□□□ -0.77
CUX1-216ENST00000558469 TACC1O75410 805 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 EFEMP2O95967 443 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 TPM1P09493 284 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 PNMA6AP0CW24 399 aaPredicted RBP10.27□□□□□ -0.77
CUX1-216ENST00000558469 GNL1P36915 607 aaPredicted RBP10.27□□□□□ -0.77
CUX1-216ENST00000558469 FXR1P51114 621 aaKnown RBP eCLIP10.27□□□□□ -0.77
CUX1-216ENST00000558469 JAM2P57087 298 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 YWHAEP62258 255 aaKnown RBP10.27□□□□□ -0.77
CUX1-216ENST00000558469 TAP1Q03518 808 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 TBX2Q13207 712 aaPredicted RBP10.27□□□□□ -0.77
CUX1-216ENST00000558469 USP41Q3LFD5 358 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 PPP2R2DQ66LE6 453 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 OVOS1Q6IE37 1185 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 LIMS2Q7Z4I7 341 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 DDX53Q86TM3 631 aaKnown RBP10.27□□□□□ -0.77
CUX1-216ENST00000558469 TMEM86AQ8N2M4 240 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 ZNF397Q8NF99 534 aaPredicted RBP10.27□□□□□ -0.77
CUX1-216ENST00000558469 OR6B3Q8NGW1 331 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 KBTBD7Q8WVZ9 684 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 JAKMIP2Q96AA8 810 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 PLVAPQ9BX97 442 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 VN1R3Q9BXE9 311 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 EDEM3Q9BZQ6 932 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 SNX25Q9H3E2 840 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 SLC28A3Q9HAS3 691 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 ALG13Q9NP73 1137 aaKnown RBP10.27□□□□□ -0.77
CUX1-216ENST00000558469 DSEQ9UL01 958 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 LUC7L2Q9Y383 392 aaKnown RBP10.27□□□□□ -0.77
CUX1-216ENST00000558469 PCDHB4Q9Y5E5 795 aa10.27□□□□□ -0.77
CUX1-216ENST00000558469 COL4A4P53420 1690 aaPredicted RBP10.27□□□□□ -0.77
CUX1-216ENST00000558469 MYO9BQ13459 2157 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 LRRC53A6NM62 1247 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 C5orf67F2Z3F1 127 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 F8VZ95 297 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 SYN3O14994 580 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 SOD2P04179 222 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 CYP11A1P05108 521 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 RB1P06400 928 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 PDGFRBP09619 1106 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 FAM163BP0C2L3 166 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 KRT5P13647 590 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 TYMPP19971 482 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 ACO1P21399 889 aaKnown RBP10.26□□□□□ -0.77
CUX1-216ENST00000558469 FGFR3P22607 806 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 WARSP23381 471 aaKnown RBP10.26□□□□□ -0.77
CUX1-216ENST00000558469 DNAJB2P25686 324 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 LMO2P25791 158 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 LHX1P48742 406 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 NDST1P52848 882 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 ADKP55263 362 aaKnown RBP10.26□□□□□ -0.77
CUX1-216ENST00000558469 ERVK-21P61565 698 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 SMAD3P84022 425 aaKnown RBP10.26□□□□□ -0.77
CUX1-216ENST00000558469 ZBED6P86452 979 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 PLCB3Q01970 1234 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 YWHAHQ04917 246 aaPredicted RBP10.26□□□□□ -0.77
CUX1-216ENST00000558469 GOLGA8FQ08AF8 430 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 GOLGA8DPQ0D2H9 430 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 INCA1Q0VD86 236 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 ORC1Q13415 861 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 ZNF394Q53GI3 561 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 RTP2Q5QGT7 225 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 VARS2Q5ST30 1063 aaKnown RBP10.26□□□□□ -0.77
CUX1-216ENST00000558469 KIAA1841Q6NSI8 718 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 TMEM270Q6UE05 265 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.26□□□□□ -0.77
CUX1-216ENST00000558469 OSTM1Q86WC4 334 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 GPIHBP1Q8IV16 184 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 VPS52Q8N1B4 723 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 THEM5Q8N1Q8 247 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 TTC39CQ8N584 583 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 UBR7Q8N806 425 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 FBXO22Q8NEZ5 403 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 SHC3Q92529 594 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 BAP1Q92560 729 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 SAMD11Q96NU1 681 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 TTPALQ9BTX7 342 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 GPR88Q9GZN0 384 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 CERS4Q9HA82 394 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 DDX43Q9NXZ2 648 aaKnown RBP10.26□□□□□ -0.77
CUX1-216ENST00000558469 IMPACTQ9P2X3 320 aa10.26□□□□□ -0.77
CUX1-216ENST00000558469 HMGXB4Q9UGU5 601 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms