RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 SPATA31D3P0C874 917 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 ADSSP30520 456 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 CASP5P51878 434 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 TNNC1P63316 161 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 BFSP1Q12934 665 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 KMT5BQ4FZB7 885 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 PABPC1LQ4VXU2 614 aaKnown RBP9.32□□□□□ -0.92
USP3-208ENST00000558285 SPATA31D4Q6ZUB0 917 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 TOP6BLQ8N6T0 577 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 C3orf58Q8NDZ4 430 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 SCFD1Q8WVM8 642 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 EDAQ92838 391 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 SMARCE1Q969G3 411 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 SYAP1Q96A49 352 aaPredicted RBP9.32□□□□□ -0.92
USP3-208ENST00000558285 PDLIM2Q96JY6 352 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 GSDMAQ96QA5 445 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 CBWD1Q9BRT8 395 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 HAPLN2Q9GZV7 340 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 INTS13Q9NVM9 706 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 CACNG4Q9UBN1 327 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 AGAP1Q9UPQ3 857 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 ZDHHC9Q9Y397 364 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 MRPS23Q9Y3D9 190 aaKnown RBP9.32□□□□□ -0.92
USP3-208ENST00000558285 TTC28Q96AY4 2481 aa9.32□□□□□ -0.92
USP3-208ENST00000558285 GOLGA8IPA6NC78 632 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 GOLGA8JA6NMD2 632 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 RBAK-RBAKDNI3L0D1 243 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 MICAL2O94851 1124 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 RHOBTB3O94955 611 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 ITGB3P05106 788 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 DLATP10515 647 aaKnown RBP9.31□□□□□ -0.92
USP3-208ENST00000558285 POLR2BP30876 1174 aaKnown RBP9.31□□□□□ -0.92
USP3-208ENST00000558285 ATICP31939 592 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 ZNF445P59923 1031 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 ENPEPQ07075 957 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 EHHADHQ08426 723 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 SIGLEC14Q08ET2 396 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 KCNA1Q09470 495 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 GPR17Q13304 367 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 MRPL58Q14197 206 aaKnown RBP9.31□□□□□ -0.92
USP3-208ENST00000558285 PSMD6Q15008 389 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 ZBTB41Q5SVQ8 909 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 PDZD4Q76G19 769 aaPredicted RBP9.31□□□□□ -0.92
USP3-208ENST00000558285 GET4Q7L5D6 327 aaPredicted RBP9.31□□□□□ -0.92
USP3-208ENST00000558285 SLC9A9Q8IVB4 645 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 ELOA2Q8IYF1 753 aaPredicted RBP9.31□□□□□ -0.92
USP3-208ENST00000558285 GUF1Q8N442 669 aaKnown RBP9.31□□□□□ -0.92
USP3-208ENST00000558285 FAM200AQ8TCP9 573 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 SPPL2BQ8TCT7 592 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 TMEM174Q8WUU8 243 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 E2F7Q96AV8 911 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 CGRRF1Q99675 332 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 IRF2BPLQ9H1B7 796 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 AVENQ9NQS1 362 aaPredicted RBP9.31□□□□□ -0.92
USP3-208ENST00000558285 ASAH2Q9NR71 780 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 GDE1Q9NZC3 331 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 EPS15L1Q9UBC2 864 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 NCOR1O75376 2440 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 MAPK13O15264 365 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 CCL16O15467 120 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 RFPL2O75678 378 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 RPL10AP62906 217 aaKnown RBP9.31□□□□□ -0.92
USP3-208ENST00000558285 ZXDAP98168 799 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 PFKPQ01813 784 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 ADCY1Q08828 1119 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 BIRC3Q13489 604 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 TDGQ13569 410 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 ARHGAP15Q53QZ3 475 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 CRELD2Q6UXH1 353 aaPredicted RBP9.31□□□□□ -0.92
USP3-208ENST00000558285 C4orf50Q6ZRC1 276 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 INTS8Q75QN2 995 aaKnown RBP9.31□□□□□ -0.92
USP3-208ENST00000558285 TAF4BQ92750 862 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 RNF166Q96A37 237 aaPredicted RBP9.31□□□□□ -0.92
USP3-208ENST00000558285 CCDC127Q96BQ5 260 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 HPDLQ96IR7 371 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 HS3ST6Q96QI5 342 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 KCNH6Q9H252 994 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 MFSD1Q9H3U5 465 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 PDE11AQ9HCR9 933 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 TMEM51Q9NW97 253 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 GDAP2Q9NXN4 497 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 MUTYHQ9UIF7 546 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 FBXL21Q9UKT6 434 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 CDH7Q9ULB5 785 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 ZKSCAN5Q9Y2L8 839 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 INSL5Q9Y5Q6 135 aa9.31□□□□□ -0.92
USP3-208ENST00000558285 ATP8B3O60423 1300 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 TRANK1O15050 2925 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 WDR27A2RRH5 827 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 C2CD4DB7Z1M9 353 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 TISP43B9A030 160 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 PSMA7O14818 248 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 NR3C1P04150 777 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 MLLT3P42568 568 aaPredicted RBP9.3□□□□□ -0.92
USP3-208ENST00000558285 CYP24A1Q07973 514 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 NFIL3Q16649 462 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 KLHL40Q2TBA0 621 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 TRIM67Q6ZTA4 783 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 GRASPQ7Z6J2 395 aaPredicted RBP9.3□□□□□ -0.92
USP3-208ENST00000558285 CBWD2Q8IUF1 395 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms