RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 TAF6P49848 677 aa14.28□□□□□ -0.12
PTCH1-215ENST00000547672 RAD23BP54727 409 aa14.28□□□□□ -0.12
PTCH1-215ENST00000547672 MGAT3Q09327 533 aa14.28□□□□□ -0.12
PTCH1-215ENST00000547672 MESDQ14696 234 aa14.28□□□□□ -0.12
PTCH1-215ENST00000547672 FBXO47Q5MNV8 452 aa14.28□□□□□ -0.12
PTCH1-215ENST00000547672 C9orf57Q5W0N0 161 aa14.28□□□□□ -0.12
PTCH1-215ENST00000547672 SCARA5Q6ZMJ2 495 aa14.28□□□□□ -0.12
PTCH1-215ENST00000547672 MON1BQ7L1V2 547 aa14.28□□□□□ -0.12
PTCH1-215ENST00000547672 COG1Q8WTW3 980 aa14.28□□□□□ -0.12
PTCH1-215ENST00000547672 ZNF296Q8WUU4 475 aaPredicted RBP14.28□□□□□ -0.12
PTCH1-215ENST00000547672 DDX27Q96GQ7 796 aaKnown RBP14.28□□□□□ -0.12
PTCH1-215ENST00000547672 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.28□□□□□ -0.12
PTCH1-215ENST00000547672 NXF3Q9H4D5 531 aaKnown RBP14.28□□□□□ -0.12
PTCH1-215ENST00000547672 OSGEPQ9NPF4 335 aa14.28□□□□□ -0.12
PTCH1-215ENST00000547672 FAM105AQ9NUU6 356 aa14.28□□□□□ -0.12
PTCH1-215ENST00000547672 POLIQ9UNA4 740 aa14.28□□□□□ -0.12
PTCH1-215ENST00000547672 CCDC151A5D8V7 595 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 KPNA7A9QM74 516 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 NCK2O43639 380 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 HUS1O60921 280 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 THP07101 528 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 SETSIPP0DME0 302 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 CTNNA2P26232 953 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 LRPAP1P30533 357 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 CXCR5P32302 372 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 MAN1A1P33908 653 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 ZNF268Q14587 947 aaPredicted RBP14.27□□□□□ -0.13
PTCH1-215ENST00000547672 PLEKHA7Q6IQ23 1121 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 WDR93Q6P2C0 686 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 TMCO3Q6UWJ1 677 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 RASGEF1CQ8N431 466 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 HNRNPLLQ8WVV9 542 aaKnown RBP14.27□□□□□ -0.13
PTCH1-215ENST00000547672 TNIP3Q96KP6 325 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 RUNDC3BQ96NL0 473 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 NCAPGQ9BPX3 1015 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 APOL6Q9BWW8 343 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 SNX25Q9H3E2 840 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 ERVK-5Q9HDB9 667 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 ARFGAP3Q9NP61 516 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 ACP6Q9NPH0 428 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 STARD7Q9NQZ5 370 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 HESX1Q9UBX0 185 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.27□□□□□ -0.13
PTCH1-215ENST00000547672 ANAPC7Q9UJX3 599 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 SNX9Q9Y5X1 595 aa14.27□□□□□ -0.13
PTCH1-215ENST00000547672 V9GYY5 206 aaPredicted RBP14.27□□□□□ -0.13
PTCH1-215ENST00000547672 ZNF185O15231 689 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 MEFVO15553 781 aaPredicted RBP14.26□□□□□ -0.13
PTCH1-215ENST00000547672 AKAP5P24588 427 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 RWDD2BP57060 319 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 SLC8A3P57103 927 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 BFSP2Q13515 415 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 PIGHQ14442 188 aaPredicted RBP14.26□□□□□ -0.13
PTCH1-215ENST00000547672 ZNF394Q53GI3 561 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 SEL1L2Q5TEA6 688 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 LHX8Q68G74 356 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 LCLAT1Q6UWP7 414 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 MAATS1Q7Z4T9 603 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 TOP6BLQ8N6T0 577 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 SLC43A3Q8NBI5 491 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 SLC4A11Q8NBS3 891 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 SMG8Q8ND04 991 aaKnown RBP14.26□□□□□ -0.13
PTCH1-215ENST00000547672 APPL2Q8NEU8 664 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 CCDC26Q8TAB7 109 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 FEZF2Q8TBJ5 459 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 SPATA18Q8TC71 538 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 IPO4Q8TEX9 1081 aaKnown RBP14.26□□□□□ -0.13
PTCH1-215ENST00000547672 C18orf8Q96DM3 657 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 FAM84AQ96KN4 292 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 UROC1Q96N76 676 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 ZMAT2Q96NC0 199 aaKnown RBP14.26□□□□□ -0.13
PTCH1-215ENST00000547672 FTHL17Q9BXU8 183 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 PARD6BQ9BYG5 372 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 SYNCQ9H7C4 482 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 RAB21Q9UL25 225 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 MTUS1Q9ULD2 1270 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 PADI3Q9ULW8 664 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 COG5Q9UP83 839 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 PHF24Q9UPV7 400 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 PCDHA3Q9Y5H8 950 aa14.26□□□□□ -0.13
PTCH1-215ENST00000547672 GRIN2DO15399 1336 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 A0A0U1RQF3 1178 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 ARVCFO00192 962 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 PARNO95453 639 aaKnown RBP14.25□□□□□ -0.13
PTCH1-215ENST00000547672 EOMESO95936 686 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 COL6A1P12109 1028 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 H2AFXP16104 143 aaPredicted RBP14.25□□□□□ -0.13
PTCH1-215ENST00000547672 COMTP21964 271 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 RRM1P23921 792 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 BRD2P25440 801 aaKnown RBP14.25□□□□□ -0.13
PTCH1-215ENST00000547672 GNL1P36915 607 aaPredicted RBP14.25□□□□□ -0.13
PTCH1-215ENST00000547672 NDST1P52848 882 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 CDH8P55286 799 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 GSCP56915 257 aaPredicted RBP14.25□□□□□ -0.13
PTCH1-215ENST00000547672 PTP4A2Q12974 167 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 MAMLD1Q13495 774 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 ACAP1Q15027 740 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 DNAJC24Q6P3W2 148 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 DCUN1D2Q6PH85 259 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 CRYBG2Q8N1P7 616 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms