RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 EXOSC10Q01780 885 aaKnown RBP4.67□□□□□ -1.66
VPS13A-213ENST00000539950 TUBB3Q13509 450 aa4.67□□□□□ -1.66
VPS13A-213ENST00000539950 RNF187Q5TA31 235 aaPredicted RBP4.67□□□□□ -1.66
VPS13A-213ENST00000539950 PSD4Q8NDX1 1056 aa4.67□□□□□ -1.66
VPS13A-213ENST00000539950 DDB2Q92466 427 aa4.67□□□□□ -1.66
VPS13A-213ENST00000539950 HAPLN3Q96S86 360 aa4.67□□□□□ -1.66
VPS13A-213ENST00000539950 C1orf43Q9BWL3 253 aa4.67□□□□□ -1.66
VPS13A-213ENST00000539950 SLAMF7Q9NQ25 335 aa4.67□□□□□ -1.66
VPS13A-213ENST00000539950 MAN1C1Q9NR34 630 aa4.67□□□□□ -1.66
VPS13A-213ENST00000539950 SIDT1Q9NXL6 827 aaKnown RBP4.67□□□□□ -1.66
VPS13A-213ENST00000539950 ETAA1Q9NY74 926 aa4.67□□□□□ -1.66
VPS13A-213ENST00000539950 AGAP1Q9UPQ3 857 aa4.67□□□□□ -1.66
VPS13A-213ENST00000539950 F5H697 171 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 CHRM3P20309 590 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 CYP2C19P33261 490 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 FXR1P51114 621 aaKnown RBP eCLIP4.66□□□□□ -1.66
VPS13A-213ENST00000539950 ZNF135P52742 658 aaPredicted RBP4.66□□□□□ -1.66
VPS13A-213ENST00000539950 HABP2Q14520 560 aaPredicted RBP4.66□□□□□ -1.66
VPS13A-213ENST00000539950 TAF2Q6P1X5 1199 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 RASAL3Q86YV0 1011 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 RFKQ969G6 155 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 TPSD1Q9BZJ3 242 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 SLC13A1Q9BZW2 595 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 GPR35Q9HC97 309 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 KMT5AQ9NQR1 393 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 RNF7Q9UBF6 113 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 PCDHA3Q9Y5H8 950 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 NR2E3Q9Y5X4 410 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 AOX1Q06278 1338 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 SPATA31A3Q5VYP0 1347 aa4.66□□□□□ -1.66
VPS13A-213ENST00000539950 VPS4BO75351 444 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 GNAI3P08754 354 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 NR2F6P10588 404 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 SMARCA1P28370 1054 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 PRDX5P30044 214 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 NDUFV1P49821 464 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 TOB1P50616 345 aaPredicted RBP4.65□□□□□ -1.67
VPS13A-213ENST00000539950 ATXN1P54253 815 aaKnown RBP4.65□□□□□ -1.67
VPS13A-213ENST00000539950 SOX10P56693 466 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 GNAI1P63096 354 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 FCRLBQ6BAA4 426 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 FAM90A1Q86YD7 464 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 CAMKK1Q8N5S9 505 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 C3orf20Q8ND61 904 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 HASPINQ8TF76 798 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 PBKQ96KB5 322 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 OSBPL9Q96SU4 736 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 AMBRA1Q9C0C7 1298 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 RLIMQ9NVW2 624 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 CFAP97Q9P2B7 532 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 DKK3Q9UBP4 350 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 WNT6Q9Y6F9 365 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 WASHC2CQ9Y4E1 1318 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 CADPSQ9ULU8 1353 aa4.65□□□□□ -1.67
VPS13A-213ENST00000539950 TRIAP1O43715 76 aa4.64□□□□□ -1.67
VPS13A-213ENST00000539950 URI1O94763 535 aaPredicted RBP4.64□□□□□ -1.67
VPS13A-213ENST00000539950 KIF20AO95235 890 aa4.64□□□□□ -1.67
VPS13A-213ENST00000539950 CHEK2O96017 543 aa4.64□□□□□ -1.67
VPS13A-213ENST00000539950 PIK3CGP48736 1102 aa4.64□□□□□ -1.67
VPS13A-213ENST00000539950 RBM20Q5T481 1227 aaKnown RBP4.64□□□□□ -1.67
VPS13A-213ENST00000539950 PTF1AQ7RTS3 328 aa4.64□□□□□ -1.67
VPS13A-213ENST00000539950 FKBP10Q96AY3 582 aa4.64□□□□□ -1.67
VPS13A-213ENST00000539950 NAF1Q96HR8 494 aaKnown RBP4.64□□□□□ -1.67
VPS13A-213ENST00000539950 SMAD5Q99717 465 aaKnown RBP4.64□□□□□ -1.67
VPS13A-213ENST00000539950 CNPPD1Q9BV87 410 aa4.64□□□□□ -1.67
VPS13A-213ENST00000539950 ACTRT3Q9BYD9 372 aa4.64□□□□□ -1.67
VPS13A-213ENST00000539950 GNL3LQ9NVN8 582 aaKnown RBP4.64□□□□□ -1.67
VPS13A-213ENST00000539950 ALG1L2C9J202 215 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 GCOM1H8Y6P7 765 aaPredicted RBP4.63□□□□□ -1.67
VPS13A-213ENST00000539950 TTLL1O95922 423 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 PRKCGP05129 697 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 CELA2AP08217 269 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 PDHA1P08559 390 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 RARBP10826 455 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 PDCP20941 246 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 PCSK6P29122 969 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 TFF2Q03403 129 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 NOGQ13253 232 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 BOP1Q14137 746 aaKnown RBP4.63□□□□□ -1.67
VPS13A-213ENST00000539950 KIF22Q14807 665 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 VPS53Q5VIR6 699 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 MIER2Q8N344 545 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 ALG8Q9BVK2 526 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 SLC29A3Q9BZD2 475 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 ASPSCR1Q9BZE9 553 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 TINAGL1Q9GZM7 467 aaPredicted RBP4.63□□□□□ -1.67
VPS13A-213ENST00000539950 ABCF2Q9UG63 623 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 SERGEFQ9UGK8 458 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 POLHQ9Y253 713 aa4.63□□□□□ -1.67
VPS13A-213ENST00000539950 FTH1P19P0C7X4 201 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 EBLN1P0CF75 366 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 ZFXP17010 805 aaPredicted RBP4.62□□□□□ -1.67
VPS13A-213ENST00000539950 ITGALP20701 1170 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 DRD4P21917 467 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 CCND1P24385 295 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 CCT8P50990 548 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 TCF15Q12870 199 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 TBCCQ15814 346 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 FAM153CQ494X1 144 aa4.62□□□□□ -1.67
VPS13A-213ENST00000539950 HEATR3Q7Z4Q2 680 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms