RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	RRP12	Q5JTH9	1297 aa	Known RBP	6.24	□□□□□ -1.41
CD44-231	ENST00000531110	SYNE3	Q6ZMZ3	975 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	SPATA21	Q7Z572	469 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	MYLK4	Q86YV6	388 aa	Predicted RBP	6.24	□□□□□ -1.41
CD44-231	ENST00000531110	TMPRSS6	Q8IU80	811 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	MFN1	Q8IWA4	741 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	C10orf67	Q8IYJ2	551 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	MIER2	Q8N344	545 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	OR2I1P	Q8NGU4	316 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	MDM1	Q8TC05	714 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	ZFAND2B	Q8WV99	257 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	MNT	Q99583	582 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	GPR20	Q99678	358 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	CPPED1	Q9BRF8	314 aa	Predicted RBP	6.24	□□□□□ -1.41
CD44-231	ENST00000531110	UBXN6	Q9BZV1	441 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	KCNH6	Q9H252	994 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	EPC1	Q9H2F5	836 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	6.24	□□□□□ -1.41
CD44-231	ENST00000531110	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	6.24	□□□□□ -1.41
CD44-231	ENST00000531110	CFAP20	Q9Y6A4	193 aa	Known RBP	6.24	□□□□□ -1.41
CD44-231	ENST00000531110	IKBKG	Q9Y6K9	419 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	SCIN	Q9Y6U3	715 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	MAPK8IP3	Q9UPT6	1336 aa		6.24	□□□□□ -1.41
CD44-231	ENST00000531110	CECR2	Q9BXF3	1484 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	NLRP1	Q9C000	1473 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	ROCK1	Q13464	1354 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	PLEKHH1	Q9ULM0	1364 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	CCDC194	A0A1B0GVG4	234 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	PABPN1L	A6NDY0	278 aa	Known RBP	6.23	□□□□□ -1.41
CD44-231	ENST00000531110	P4HA2	O15460	535 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	HTRA2	O43464	458 aa	Predicted RBP	6.23	□□□□□ -1.41
CD44-231	ENST00000531110	AHCYL1	O43865	530 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	PLIN1	O60240	522 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	PTPN7	P35236	360 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	RRP1	P56182	461 aa	Known RBP	6.23	□□□□□ -1.41
CD44-231	ENST00000531110	KRTAP10-2	P60368	255 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	ATP8B2	P98198	1209 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	KIF23	Q02241	960 aa	Predicted RBP	6.23	□□□□□ -1.41
CD44-231	ENST00000531110	NCBP1	Q09161	790 aa	Known RBP	6.23	□□□□□ -1.41
CD44-231	ENST00000531110	RRP1B	Q14684	758 aa	Known RBP	6.23	□□□□□ -1.41
CD44-231	ENST00000531110	NBPF8	Q3BBV2	869 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	CCDC38	Q502W7	563 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	MFSD14B	Q5SR56	506 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	WLS	Q5T9L3	541 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	MFSD4B	Q5TF39	518 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	KCNV1	Q6PIU1	500 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	GBP6	Q6ZN66	633 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	RNF207	Q6ZRF8	634 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	KRT77	Q7Z794	578 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	ARHGEF25	Q86VW2	580 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	GAS2L3	Q86XJ1	694 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	DRC7	Q8IY82	874 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	MAB21L3	Q8N8X9	362 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	SMYD1	Q8NB12	490 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	ZFP28	Q8NHY6	868 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	TEKT4	Q8WW24	435 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	ATXN2L	Q8WWM7	1075 aa	Known RBP	6.23	□□□□□ -1.41
CD44-231	ENST00000531110	CEP95	Q96GE4	821 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	OSBPL9	Q96SU4	736 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	NAP1L3	Q99457	506 aa	Predicted RBP	6.23	□□□□□ -1.41
CD44-231	ENST00000531110	GPR87	Q9BY21	358 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	SENP6	Q9GZR1	1112 aa	Predicted RBP	6.23	□□□□□ -1.41
CD44-231	ENST00000531110	NRBP1	Q9UHY1	535 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	INTU	Q9ULD6	942 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	MYO6	Q9UM54	1294 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	LZTS1	Q9Y250	596 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	ANKRD6	Q9Y2G4	727 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	LUC7L2	Q9Y383	392 aa	Known RBP	6.23	□□□□□ -1.41
CD44-231	ENST00000531110	XDH	P47989	1333 aa		6.23	□□□□□ -1.41
CD44-231	ENST00000531110	CXorf49	A8MYA2	514 aa	Predicted RBP	6.22	□□□□□ -1.41
CD44-231	ENST00000531110	DIRC3	C9JPN6	131 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	TMEM232	C9JQI7	657 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	ERC2	O15083	957 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	TRIM24	O15164	1050 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	CEP104	O60308	925 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	DTNB	O60941	627 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	GPR32	O75388	356 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	FES	P07332	822 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	EDNRB	P24530	442 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	ACTN2	P35609	894 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	CLRN1	P58418	232 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	CRHR2	Q13324	411 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	MTM1	Q13496	603 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	SPDYA	Q5MJ70	313 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	ODR4	Q5SWX8	454 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	CCDC122	Q5T0U0	273 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110		Q6ZRM9	215 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	SEM1	Q6ZVN7	128 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	MICALCL	Q6ZW33	695 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	FAM114A1	Q8IWE2	563 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	PALM2	Q8IXS6	379 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	PPM1N	Q8N819	430 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	HOOK2	Q96ED9	719 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	HSPBAP1	Q96EW2	488 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	RBM17	Q96I25	401 aa	Known RBP	6.22	□□□□□ -1.41
CD44-231	ENST00000531110	FAM81B	Q96LP2	452 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	TTC14	Q96N46	770 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	IWS1	Q96ST2	819 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	STK31	Q9BXU1	1019 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	CPEB1	Q9BZB8	566 aa	Known RBP	6.22	□□□□□ -1.41

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