RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PLEKHA7Q6IQ23 1121 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 ZNF677Q86XU0 584 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 SLITRK1Q96PX8 696 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 SLC38A10Q9HBR0 1119 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 ACTL7BQ9Y614 415 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 OGDHQ02218 1023 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 PTP4A2Q12974 167 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 SMTNL2Q2TAL5 461 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 WDR72Q3MJ13 1102 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 KCNT1Q5JUK3 1230 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 LONP2Q86WA8 852 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 CNKSR1Q969H4 720 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 SENP7Q9BQF6 1050 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 TBC1D10AQ9BXI6 508 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 TRIM6Q9C030 488 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 SLC5A4Q9NY91 659 aa9.77□□□□□ -0.85
LIMCH1-215ENST00000512632 EDF1O60869 148 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 ZC3H11AO75152 810 aaKnown RBP eCLIP9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 TJP3O95049 919 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 APBA3O96018 575 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 T-ENOLP0DO92 83 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 CCNB1P14635 433 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 ADRA1DP25100 572 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 PRKCEQ02156 737 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 TFDP1Q14186 410 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 SPDYE2Q495Y8 402 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 CYP4A22Q5TCH4 519 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 SPDL1Q96EA4 605 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 HAPLN2Q9GZV7 340 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 UBN1Q9NPG3 1134 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 PARVAQ9NVD7 372 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 STARD13Q9Y3M8 1113 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 K7ERI5 159 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 KIF1CO43896 1103 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 ZBED4O75132 1171 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 DGAT1O75907 488 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 CST3P01034 146 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 GM2AP17900 193 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 NRLP54845 237 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 OTOAQ7RTW8 1153 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 RCOR2Q8IZ40 523 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 FAM13CQ8NE31 585 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 ATP6V0A1Q93050 837 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 ATG4CQ96DT6 458 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 RAB3IPQ96QF0 476 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 FBXO40Q9UH90 709 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 ENTPD5O75356 428 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 BRD2P25440 801 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 RAD23BP54727 409 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 SLC8A3P57103 927 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 LMNB2Q03252 620 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 PSMD6Q15008 389 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 TAF1BQ53T94 588 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 DNAJC24Q6P3W2 148 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 SPOCD1Q6ZMY3 1216 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 MAB21L3Q8N8X9 362 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 ZNF75CPQ92670 426 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 SLC7A6OSQ96CW6 309 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 TCHPQ9BT92 498 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 ZWILCHQ9H900 591 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 RNF146Q9NTX7 359 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 SCINQ9Y6U3 715 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 ANKRD31Q8N7Z5 1873 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 NEFHP12036 1026 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 YARSP54577 528 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 ZNF252P-AS1Q0IIN9 211 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 ACVR2BQ13705 512 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 MOGSQ13724 837 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 PDK4Q16654 411 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 ANKRD22Q5VYY1 191 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 CENPUQ71F23 418 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 MTDHQ86UE4 582 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 ALLCQ8N6M5 410 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 MCPH1Q8NEM0 835 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 TTC8Q8TAM2 541 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 NUDCD1Q96RS6 583 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 CYP26B1Q9NR63 512 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 IP6K2Q9UHH9 426 aa9.76□□□□□ -0.85
LIMCH1-215ENST00000512632 TMEM191CA6NGB0 347 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 ATP2A1O14983 1001 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 STBD1O95210 358 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 TMEM191BP0C7N4 346 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 NCOA4Q13772 614 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 BBS9Q3SYG4 887 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 STYK1Q6J9G0 422 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 C3orf62Q6ZUJ4 267 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 VSIG10LQ86VR7 867 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 PHF13Q86YI8 300 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 RIBC1Q8N443 379 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 PYROXD1Q8WU10 500 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 RBM41Q96IZ5 413 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 MSTO1Q9BUK6 570 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 ARHGAP28Q9P2N2 729 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 AGTPBP1Q9UPW5 1226 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 WDR46O15213 610 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 ALOX15BO15296 676 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 ABHD2P08910 425 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 WEE2P0C1S8 567 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 MMP8P22894 467 aa9.75□□□□□ -0.85
LIMCH1-215ENST00000512632 PEX19P40855 299 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms