RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 PTPRHQ9HD43 1115 aa7.12□□□□□ -1.27
CCDC39-207ENST00000495817 ARFGAP3Q9NP61 516 aa7.12□□□□□ -1.27
CCDC39-207ENST00000495817 JKAMPQ9P055 326 aa7.12□□□□□ -1.27
CCDC39-207ENST00000495817 CPNE7Q9UBL6 633 aa7.12□□□□□ -1.27
CCDC39-207ENST00000495817 AFF4Q9UHB7 1163 aaKnown RBP7.12□□□□□ -1.27
CCDC39-207ENST00000495817 FZD1Q9UP38 647 aa7.12□□□□□ -1.27
CCDC39-207ENST00000495817 REXO2Q9Y3B8 237 aaKnown RBP7.12□□□□□ -1.27
CCDC39-207ENST00000495817 PAXBP1Q9Y5B6 917 aa7.12□□□□□ -1.27
CCDC39-207ENST00000495817 LEFTY2O00292 366 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 RNASET2O00584 256 aaKnown RBP7.11□□□□□ -1.27
CCDC39-207ENST00000495817 TCEA3O75764 348 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 FSHBP01225 129 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 ANXA1P04083 346 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 THP07101 528 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 HDCP19113 662 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 STT3AP46977 705 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 HABP2Q14520 560 aaPredicted RBP7.11□□□□□ -1.27
CCDC39-207ENST00000495817 ERAP2Q6P179 960 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 RHOUQ7L0Q8 258 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 SESTD1Q86VW0 696 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 RHOT2Q8IXI1 618 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 AOPEPQ8N6M6 819 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 SLC16A11Q8NCK7 471 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 MYOCQ99972 504 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 BRD9Q9H8M2 597 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 GPRC5BQ9NZH0 403 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 TRPM5Q9NZQ8 1165 aa7.11□□□□□ -1.27
CCDC39-207ENST00000495817 TCRBV7S2A1N4TA0A589 114 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 POM121BA6NF01 834 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 PRSS29PA6NIE9 313 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 AHRRA9YTQ3 701 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 KIAA0391O15091 583 aaKnown RBP7.1□□□□□ -1.27
CCDC39-207ENST00000495817 CREB3O43889 395 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 FOSP01100 380 aaPredicted RBP7.1□□□□□ -1.27
CCDC39-207ENST00000495817 POMCP01189 267 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 ITGB1P05556 798 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 TSHRP16473 764 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 LAG3P18627 525 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 RAP2BP61225 183 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 EXOSC9Q06265 439 aaKnown RBP7.1□□□□□ -1.27
CCDC39-207ENST00000495817 FAM209BQ5JX69 171 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 FAM102AQ5T9C2 384 aaPredicted RBP7.1□□□□□ -1.27
CCDC39-207ENST00000495817 ARMC6Q6NXE6 501 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 ZNF529Q6P280 563 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 ZNF783Q6ZMS7 281 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 ZNF365Q70YC5 407 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 VPS37AQ8NEZ2 397 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 P2RX7Q99572 595 aaKnown RBP7.1□□□□□ -1.27
CCDC39-207ENST00000495817 NRDE2Q9H7Z3 1164 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 MMRN2Q9H8L6 949 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.1□□□□□ -1.27
CCDC39-207ENST00000495817 STK32BQ9NY57 414 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 HS3ST3A1Q9Y663 406 aa7.1□□□□□ -1.27
CCDC39-207ENST00000495817 PNPLA7Q6ZV29 1317 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 TRIM43BA6NCK2 446 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 DRGXA6NNA5 263 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 AKAP8O43823 692 aaKnown RBP7.09□□□□□ -1.27
CCDC39-207ENST00000495817 HAUS5O94927 633 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 HLA-DOAP06340 250 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 GJB1P08034 283 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 RARBP10826 455 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 KCNJ5P48544 419 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 CHN2P52757 468 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 AGAP9Q5VTM2 703 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 IGFL4Q6B9Z1 124 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 MYLK4Q86YV6 388 aaPredicted RBP7.09□□□□□ -1.27
CCDC39-207ENST00000495817 RNF152Q8N8N0 203 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 DDX17Q92841 729 aaKnown RBP7.09□□□□□ -1.27
CCDC39-207ENST00000495817 TRIM43Q96BQ3 446 aaPredicted RBP7.09□□□□□ -1.27
CCDC39-207ENST00000495817 MYEOVQ96EZ4 313 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 KRTAP4-2Q9BYR5 136 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 CERS4Q9HA82 394 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 GPR35Q9HC97 309 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 SLC2A4RGQ9NR83 387 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 COL20A1Q9P218 1284 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 RGS17Q9UGC6 210 aaPredicted RBP7.09□□□□□ -1.27
CCDC39-207ENST00000495817 LRCH1Q9Y2L9 728 aa7.09□□□□□ -1.27
CCDC39-207ENST00000495817 F5H423 210 aaPredicted RBP7.08□□□□□ -1.28
CCDC39-207ENST00000495817 BTN3A1O00481 513 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 NCK2O43639 380 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 TBC1D4O60343 1298 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 FGF18O76093 207 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 ABHD16AO95870 558 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 PARP1P09874 1014 aaKnown RBP7.08□□□□□ -1.28
CCDC39-207ENST00000495817 SLC6A4P31645 630 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 RNASE9P60153 205 aaKnown RBP7.08□□□□□ -1.28
CCDC39-207ENST00000495817 NOMO3P69849 1222 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 MXRA7P84157 204 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 UBXN2BQ14CS0 331 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 C4orf46Q504U0 113 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 BRIP1Q9BX63 1249 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 WDR12Q9GZL7 423 aaKnown RBP7.08□□□□□ -1.28
CCDC39-207ENST00000495817 SCAND2PQ9GZW5 306 aaPredicted RBP7.08□□□□□ -1.28
CCDC39-207ENST00000495817 PCED1AQ9H1Q7 454 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 SMURF2Q9HAU4 748 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 SLAMF7Q9NQ25 335 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 AKIP1Q9NQ31 210 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 SACM1LQ9NTJ5 587 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 ATP11BQ9Y2G3 1177 aa7.08□□□□□ -1.28
CCDC39-207ENST00000495817 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms