RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 MYADML2A6NDP7 307 aa6.64□□□□□ -1.35
USP48-209ENST00000487880 M0QYG6 137 aa6.64□□□□□ -1.35
USP48-209ENST00000487880 UNC5CO95185 931 aa6.64□□□□□ -1.35
USP48-209ENST00000487880 TNFRSF1AP19438 455 aa6.64□□□□□ -1.35
USP48-209ENST00000487880 PTGS2P35354 604 aa6.64□□□□□ -1.35
USP48-209ENST00000487880 RESTQ13127 1097 aa6.64□□□□□ -1.35
USP48-209ENST00000487880 SAFBQ15424 915 aaKnown RBP eCLIP6.64□□□□□ -1.35
USP48-209ENST00000487880 MAP9Q49MG5 647 aa6.64□□□□□ -1.35
USP48-209ENST00000487880 FAM160B1Q5W0V3 765 aa6.64□□□□□ -1.35
USP48-209ENST00000487880 KSR2Q6VAB6 950 aa6.64□□□□□ -1.35
USP48-209ENST00000487880 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.64□□□□□ -1.35
USP48-209ENST00000487880 PCSK9Q8NBP7 692 aaKnown RBP6.64□□□□□ -1.35
USP48-209ENST00000487880 NSUN7Q8NE18 718 aaKnown RBP6.64□□□□□ -1.35
USP48-209ENST00000487880 OR6B3Q8NGW1 331 aa6.64□□□□□ -1.35
USP48-209ENST00000487880 MAML1Q92585 1016 aa6.64□□□□□ -1.35
USP48-209ENST00000487880 SMOQ99835 787 aa6.64□□□□□ -1.35
USP48-209ENST00000487880 SRRDQ9UH36 339 aa6.64□□□□□ -1.35
USP48-209ENST00000487880 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.64□□□□□ -1.35
USP48-209ENST00000487880 MTO1Q9Y2Z2 717 aaKnown RBP6.64□□□□□ -1.35
USP48-209ENST00000487880 A0A087WWL8 130 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 PRAMEF33A0A0G2JMD5 474 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 CENPVL1A0A0U1RR11 272 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 E7ENX8 843 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 POLRMTO00411 1230 aaKnown RBP6.63□□□□□ -1.35
USP48-209ENST00000487880 BTN3A1O00481 513 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 PRAMEF10O60809 474 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 CDKL5O76039 1030 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 GRPP07492 148 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 INSRRP14616 1297 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 ANXA11P50995 505 aaKnown RBP6.63□□□□□ -1.35
USP48-209ENST00000487880 MC2RQ01718 297 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 TAP2Q03519 686 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 SCAPQ12770 1279 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 CNGA2Q16280 664 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 LSM12Q3MHD2 195 aaKnown RBP6.63□□□□□ -1.35
USP48-209ENST00000487880 CRIP3Q6Q6R5 217 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 ZNF783Q6ZMS7 281 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 MRGPREQ86SM8 312 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 CCAR1Q8IX12 1150 aaKnown RBP6.63□□□□□ -1.35
USP48-209ENST00000487880 CCDC146Q8IYE0 955 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 FBXO41Q8TF61 875 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 HAS1Q92839 578 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 SPATA5L1Q9BVQ7 753 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 ALOXE3Q9BYJ1 711 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 NUP62CLQ9H1M0 184 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 NRDE2Q9H7Z3 1164 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 GALNT9Q9HCQ5 603 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 SLC2A4RGQ9NR83 387 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 CPNE7Q9UBL6 633 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 HESX1Q9UBX0 185 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 FAM50BQ9Y247 325 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 NOX1Q9Y5S8 564 aa6.63□□□□□ -1.35
USP48-209ENST00000487880 NARSO43776 548 aaKnown RBP6.62□□□□□ -1.35
USP48-209ENST00000487880 LPXNO60711 386 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 SPDEFO95238 335 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 RPL17P18621 184 aaKnown RBP6.62□□□□□ -1.35
USP48-209ENST00000487880 SLC11A2P49281 568 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 VAV2P52735 878 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 SUMO3P55854 103 aaPredicted RBP6.62□□□□□ -1.35
USP48-209ENST00000487880 MXRA7P84157 204 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 FMO1Q01740 532 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 BOP1Q14137 746 aaKnown RBP6.62□□□□□ -1.35
USP48-209ENST00000487880 GEN1Q17RS7 908 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 SPDYE7PQ495Y7 208 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 TIGD2Q4W5G0 525 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 IGFL4Q6B9Z1 124 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 CLNKQ7Z7G1 428 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 ARHGEF19Q8IW93 802 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 SYNE4Q8N205 404 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 PSD4Q8NDX1 1056 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 FAM46DQ8NEK8 389 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 RNF31Q96EP0 1072 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 MSLNLQ96KJ4 702 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 VPS11Q9H270 941 aa6.62□□□□□ -1.35
USP48-209ENST00000487880 CCDC194A0A1B0GVG4 234 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 TRIM43BA6NCK2 446 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 PMM2O15305 246 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 ERN1O75460 977 aaKnown RBP6.61□□□□□ -1.35
USP48-209ENST00000487880 BRAFP15056 766 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 VIPR2P41587 438 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 UCP3P55916 312 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 DYRK1AQ13627 763 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 ZXDCQ2QGD7 858 aaPredicted RBP6.61□□□□□ -1.35
USP48-209ENST00000487880 SP5Q6BEB4 398 aaPredicted RBP6.61□□□□□ -1.35
USP48-209ENST00000487880 TAF2Q6P1X5 1199 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 MICU3Q86XE3 530 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 PHKBQ93100 1093 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 TRIM43Q96BQ3 446 aaPredicted RBP6.61□□□□□ -1.35
USP48-209ENST00000487880 NMD3Q96D46 503 aaKnown RBP6.61□□□□□ -1.35
USP48-209ENST00000487880 HEPHQ9BQS7 1158 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 MLST8Q9BVC4 326 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 APOL5Q9BWW9 433 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 UNKLQ9H9P5 680 aaKnown RBP6.61□□□□□ -1.35
USP48-209ENST00000487880 KIAA1586Q9HCI6 787 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 AFF4Q9UHB7 1163 aaKnown RBP6.61□□□□□ -1.35
USP48-209ENST00000487880 PAXBP1Q9Y5B6 917 aa6.61□□□□□ -1.35
USP48-209ENST00000487880 SPATA31A3Q5VYP0 1347 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 UNC119BA6NIH7 251 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 DCLK1O15075 740 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms