RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 OR4Q2P0C623 313 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 MYL4P12829 197 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 IDEP14735 1019 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 WEE1P30291 646 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 AMPD3Q01432 767 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 FAM173BQ6P4H8 233 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 CNNM4Q6P4Q7 775 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 TPRG1Q6ZUI0 275 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 MFSD6LQ8IWD5 586 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 EFCAB13Q8IY85 973 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 SYCP3Q8IZU3 236 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 LRRC52Q8N7C0 313 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 ZSCAN18Q8TBC5 510 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 CLDN23Q96B33 292 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 PGLYRP2Q96PD5 576 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 ZCWPW1Q9H0M4 648 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 DNAJC25Q9H1X3 360 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 PANK4Q9NVE7 773 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 KBTBD4Q9NVX7 518 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 OBP2AQ9NY56 170 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 ITGA11Q9UKX5 1188 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 EP300Q09472 2414 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 OBSL1O75147 1896 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 OTOGLQ3ZCN5 2332 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 ZNF638Q14966 1978 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 TISP43B9A030 160 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 CYB561D2O14569 222 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 EIF3DO15371 548 aaKnown RBP eCLIP13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 EXTL3O43909 919 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 CDC25CP30307 473 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 UBXN2BQ14CS0 331 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 SURF1Q15526 300 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 ARHGAP15Q53QZ3 475 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 ATL3Q6DD88 541 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 POTEHQ6S545 545 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 VITQ6UXI7 678 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 DCP1BQ8IZD4 617 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 HS6ST3Q8IZP7 471 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 TMEM86AQ8N2M4 240 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 ST13P5Q8NFI4 369 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 OR10T2Q8NGX3 314 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 SHKBP1Q8TBC3 707 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 LEO1Q8WVC0 666 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 PYM1Q9BRP8 204 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 FAM213AQ9BRX8 229 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 PLA2G2FQ9BZM2 168 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 CRISPLD1Q9H336 500 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 SLITRK6Q9H5Y7 841 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 ZNF334Q9HCZ1 680 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 RBAKQ9NYW8 714 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 UBE4BO95155 1302 aa13.09□□□□□ -0.31
SQSTM1-207ENST00000481335 A0A087X0B3 334 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 A0A1W2PRU2 124 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 FAM170BA6NMN3 283 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 SOBPA7XYQ1 873 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 CHADO15335 359 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 LAMTOR5O43504 91 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 CUTAO60888 179 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 LMNAP02545 664 aaKnown RBP13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 SP9P0CG40 484 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 TARSP26639 723 aaKnown RBP13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 CASP5P51878 434 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 SNRPFP62306 86 aaKnown RBP13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 TSPY1Q01534 308 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 KCNA1Q09470 495 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 FCHO2Q0JRZ9 810 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 TEAD2Q15562 447 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 E2F4Q16254 413 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 NFE2Q16621 373 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 SLC39A12Q504Y0 691 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 MAMSTRQ6ZN01 415 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 DNAJB7Q7Z6W7 309 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 GPD1LQ8N335 351 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 TMEM130Q8N3G9 435 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 IQUBQ8NA54 791 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 ATAD1Q8NBU5 361 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 KCNG4Q8TDN1 519 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 GCNAQ96QF7 691 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 FAM126AQ9BYI3 521 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 TRIM9Q9C026 710 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 KIAA1586Q9HCI6 787 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 HEBP1Q9NRV9 189 aa13.08□□□□□ -0.32
SQSTM1-207ENST00000481335 WDR87Q6ZQQ6 2873 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 ARNTLO00327 626 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 ZNF263O14978 683 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 GDI1P31150 447 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 TFAMQ00059 246 aaKnown RBP13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 PLCB2Q00722 1185 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 GRM2Q14416 872 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 MGAT5BQ3V5L5 792 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 HSCBQ8IWL3 235 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 PDILTQ8N807 584 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 C1orf127Q8N9H9 656 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 ZSWIM3Q96MP5 696 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 TMEM209Q96SK2 561 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 ACBD6Q9BR61 282 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 C8orf33Q9H7E9 229 aaPredicted RBP13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 ABCB6Q9NP58 842 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 SPATA6Q9NWH7 488 aaPredicted RBP13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 GDAP2Q9NXN4 497 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms