RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SLC17A8Q8NDX2 589 aa4.61□□□□□ -1.67
CCDC88A-212ENST00000474059 TRIB1Q96RU8 372 aa4.61□□□□□ -1.67
CCDC88A-212ENST00000474059 A0A0B4J269 797 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 PRSS29PA6NIE9 313 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 K7ESF4 209 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 BRINP1O60477 761 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 ZFXP17010 805 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 TUBB3Q13509 450 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 RUSC1-AS1Q66K80 236 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 PPM1NQ8N819 430 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 SSH1Q8WYL5 1049 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 FKBP10Q96AY3 582 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 ZC3H10Q96K80 434 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 DRC1Q96MC2 740 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 CAMKK2Q96RR4 588 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 OSBPL9Q96SU4 736 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 ALG8Q9BVK2 526 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 PACSIN1Q9BY11 444 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 ELOVL5Q9NYP7 299 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 EHD3Q9NZN3 535 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 IPPQ9Y573 584 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 SPATA31A3Q5VYP0 1347 aa4.6□□□□□ -1.67
CCDC88A-212ENST00000474059 CERS1P27544 350 aa4.59□□□□□ -1.67
CCDC88A-212ENST00000474059 NR4A2P43354 598 aa4.59□□□□□ -1.67
CCDC88A-212ENST00000474059 NDUFV1P49821 464 aa4.59□□□□□ -1.67
CCDC88A-212ENST00000474059 LINC00205P59089 165 aa4.59□□□□□ -1.67
CCDC88A-212ENST00000474059 DENND1AQ8TEH3 1009 aa4.59□□□□□ -1.67
CCDC88A-212ENST00000474059 ACTRT3Q9BYD9 372 aa4.59□□□□□ -1.67
CCDC88A-212ENST00000474059 CAAP1Q9H8G2 361 aa4.59□□□□□ -1.67
CCDC88A-212ENST00000474059 TDP1Q9NUW8 608 aa4.59□□□□□ -1.67
CCDC88A-212ENST00000474059 TBC1D30Q9Y2I9 924 aa4.59□□□□□ -1.67
CCDC88A-212ENST00000474059 H0YIZ8 118 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 PDHA1P08559 390 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 CYP2D6P10635 497 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 PIGFQ07326 219 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 IL10RAQ13651 578 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 ATP2B3Q16720 1220 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 C3orf36Q3SXR2 165 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 VPS53Q5VIR6 699 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 PRAMEF17Q5VTA0 474 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 TAF2Q6P1X5 1199 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 ZNF551Q7Z340 670 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 KLHDC4Q8TBB5 520 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 PRSS22Q9GZN4 317 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 NRIP3Q9NQ35 241 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 LIMCH1Q9UPQ0 1083 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 AGAP1Q9UPQ3 857 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 TBX22Q9Y458 520 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 PCDHB1Q9Y5F3 818 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 NR2E3Q9Y5X4 410 aa4.58□□□□□ -1.68
CCDC88A-212ENST00000474059 SMIM35A0A1B0GVV1 85 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 TRIM75PA6NK02 468 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 NT5C1B-RDH14C9J2C7 533 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 PRRT4C9JH25 899 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 GPR39O43194 453 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 SGTAO43765 313 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 ONECUT2O95948 504 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 TUBB4AP04350 444 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 CCT4P50991 539 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 TCF15Q12870 199 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 DAZAP2Q15038 168 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 TBCCQ15814 346 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 CEP85Q6P2H3 762 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 SLC30A10Q6XR72 485 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 SAMD14Q8IZD0 417 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 FAM126AQ9BYI3 521 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 ANLNQ9NQW6 1124 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 SH3BP4Q9P0V3 963 aa4.57□□□□□ -1.68
CCDC88A-212ENST00000474059 F5H697 171 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 HTRA2O43464 458 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 JTBO76095 146 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 C5AR1P21730 350 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 BMPR2Q13873 1038 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 RAPGEF1Q13905 1077 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 BOP1Q14137 746 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 INAVAQ3KP66 663 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 RBM20Q5T481 1227 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 RSPH3Q86UC2 560 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 KRT73Q86Y46 540 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 PSD4Q8NDX1 1056 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 TBC1D5Q92609 795 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 JADE3Q92613 823 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 SMOQ99835 787 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 MACROD1Q9BQ69 325 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 TPSD1Q9BZJ3 242 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 VPS16Q9H269 839 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 ARHGEF3Q9NR81 526 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 DLL3Q9NYJ7 618 aa4.56□□□□□ -1.68
CCDC88A-212ENST00000474059 SMIM22K7EJ46 135 aa4.55□□□□□ -1.68
CCDC88A-212ENST00000474059 F2RL2O00254 374 aa4.55□□□□□ -1.68
CCDC88A-212ENST00000474059 POLRMTO00411 1230 aaKnown RBP4.55□□□□□ -1.68
CCDC88A-212ENST00000474059 ANXA1P04083 346 aa4.55□□□□□ -1.68
CCDC88A-212ENST00000474059 FAPQ12884 760 aa4.55□□□□□ -1.68
CCDC88A-212ENST00000474059 ZNF260Q3ZCT1 412 aa4.55□□□□□ -1.68
CCDC88A-212ENST00000474059 CATSPERGQ6ZRH7 1159 aa4.55□□□□□ -1.68
CCDC88A-212ENST00000474059 MAVSQ7Z434 540 aa4.55□□□□□ -1.68
CCDC88A-212ENST00000474059 CHSY1Q86X52 802 aa4.55□□□□□ -1.68
CCDC88A-212ENST00000474059 CBARPQ8N350 705 aaPredicted RBP4.55□□□□□ -1.68
CCDC88A-212ENST00000474059 C8orf58Q8NAV2 365 aa4.55□□□□□ -1.68
CCDC88A-212ENST00000474059 KAT5Q92993 513 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms