RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	USP15	Q9Y4E8	981 aa	Predicted RBP	4.71	□□□□□ -1.66
PTCD3-209	ENST00000472044		F8W8V4	182 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044		M0QYG6	137 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	KPNA5	O15131	536 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	MUSK	O15146	869 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	RPS6KA4	O75676	772 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	KIF20A	O95235	890 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	ELANE	P08246	267 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	CYP2C9	P11712	490 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	TSHR	P16473	764 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	SERPINB3	P29508	390 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	VIPR2	P41587	438 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	MAGEA10	P43363	369 aa	Predicted RBP	4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	TOB1	P50616	345 aa	Predicted RBP	4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	HTRA4	P83105	476 aa	Predicted RBP	4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	BTK	Q06187	659 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	EFEMP1	Q12805	493 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	LONRF3	Q496Y0	759 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	PDCD4	Q53EL6	469 aa	Known RBP	4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	C3orf38	Q5JPI3	329 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	MAPKAPK5	Q8IW41	473 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	SPICE1	Q8N0Z3	855 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	PCSK9	Q8NBP7	692 aa	Known RBP	4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	DEPTOR	Q8TB45	409 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	DVL3	Q92997	716 aa	Predicted RBP	4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	RIPOR3	Q96MK2	946 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	C8orf49	Q96NF6	230 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	SMO	Q99835	787 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	SLC46A2	Q9BY10	475 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	A1CF	Q9NQ94	594 aa	Known RBP	4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	VSX1	Q9NZR4	365 aa	Predicted RBP	4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	FNIP2	Q9P278	1114 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	HSFX1	Q9UBD0	423 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	XPR1	Q9UBH6	696 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	HESX1	Q9UBX0	185 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	SORCS3	Q9UPU3	1222 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	CORO2B	Q9UQ03	480 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	TMX2	Q9Y320	296 aa		4.7	□□□□□ -1.66
PTCD3-209	ENST00000472044	CCDC195	A0A1B0GUA6	201 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	CCDC78	A2IDD5	438 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	MARCH11	A6NNE9	402 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	PYCARD-AS1	I3L0S3	204 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	POLRMT	O00411	1230 aa	Known RBP	4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	PLSCR1	O15162	318 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	SOAT2	O75908	522 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	SCAF4	O95104	1147 aa	Known RBP	4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	GPANK1	O95872	356 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	CFI	P05156	583 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	XRCC6	P12956	609 aa	Known RBP eCLIP	4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	FGFR4	P22455	802 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	STT3A	P46977	705 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	UCP3	P55916	312 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	RPS16	P62249	146 aa	Known RBP	4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	OCA2	Q04671	838 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	DGKK	Q5KSL6	1271 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	ARMC6	Q6NXE6	501 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	TMEM132C	Q8N3T6	1108 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	DNAJC5G	Q8N7S2	189 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	FAM46D	Q8NEK8	389 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	ZNF483	Q8TF39	744 aa	Predicted RBP	4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	FUBP1	Q96AE4	644 aa	Known RBP	4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	BOD1	Q96IK1	185 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	LRIG1	Q96JA1	1093 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	MOGAT1	Q96PD6	335 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	TRIB1	Q96RU8	372 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	HEPH	Q9BQS7	1158 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	SERHL	Q9NQF3	203 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	TMEM74B	Q9NUR3	256 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	MRPS18A	Q9NVS2	196 aa	Known RBP	4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	TRPM5	Q9NZQ8	1165 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	CEP72	Q9P209	647 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	TAGLN3	Q9UI15	199 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	KCNE5	Q9UJ90	142 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	CDYL	Q9Y232	598 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	TSC22D4	Q9Y3Q8	395 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	FPGT-TNNI3K	V9GXZ4	949 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	SPATA31A3	Q5VYP0	1347 aa		4.69	□□□□□ -1.66
PTCD3-209	ENST00000472044	AATK	Q6ZMQ8	1374 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044		A0A1W2PPC4	97 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044		A0A1W2PS29	197 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	MYADML2	A6NDP7	307 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	POM121B	A6NF01	834 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	MYO1C	O00159	1063 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	RNASET2	O00584	256 aa	Known RBP	4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	FGF18	O76093	207 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	PEX11B	O96011	259 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	LDHA	P00338	332 aa	Known RBP	4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	PARP1	P09874	1014 aa	Known RBP	4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	SETSIP	P0DME0	302 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	KCNA2	P16389	499 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	TNFSF4	P23510	183 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	KLRC1	P26715	233 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	HSD11B2	P80365	405 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	CDSN	Q15517	529 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	FAM209B	Q5JX69	171 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	IZUMO3	Q5VZ72	239 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	B3GNTL1	Q67FW5	361 aa	Predicted RBP	4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	TAPT1	Q6NXT6	567 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	FOXR2	Q6PJQ5	311 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	GAS2L3	Q86XJ1	694 aa		4.68	□□□□□ -1.66

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