RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 HOXC6P09630 235 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 ATF7P17544 494 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-217ENST00000466159 IFNAR2P48551 515 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 GRM1Q13255 1194 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 MXD4Q14582 209 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-217ENST00000466159 PLCB4Q15147 1175 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 SPRED3Q2MJR0 410 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 CELF3Q5SZQ8 465 aaKnown RBP9.47□□□□□ -0.89
SYNE1-217ENST00000466159 GKAP1Q5VSY0 366 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-217ENST00000466159 IZUMO3Q5VZ72 239 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 DNAJC24Q6P3W2 148 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 DCUN1D2Q6PH85 259 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 MOB2Q70IA6 237 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 GSTA5Q7RTV2 222 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 ZBTB8OSQ8IWT0 167 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 CACNA2D3Q8IZS8 1091 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 NLRP4Q96MN2 994 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 SLITRK1Q96PX8 696 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 OSBPL7Q9BZF2 842 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 NINJ2Q9NZG7 142 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 DNPEPQ9ULA0 475 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 OTOFQ9HC10 1997 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 LRRC37A2A6NM11 1700 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 IGKV6-21A0A0C4DH24 114 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 INO80B-WBP1J3KQ70 363 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 KRT1P04264 644 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 ZSCAN5DPP0CG00 497 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 KLRC2P26717 231 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 ASPAP45381 313 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 ZNF699Q32M78 642 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 EEF1DP3Q658K8 133 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 FBXO16Q8IX29 292 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-217ENST00000466159 TMEM192Q8IY95 271 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 RCOR2Q8IZ40 523 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 CCDC89Q8N998 374 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 TMEM35BQ8NCS4 154 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 TCP11Q8WWU5 503 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 ARHGEF2Q92974 986 aaKnown RBP9.47□□□□□ -0.89
SYNE1-217ENST00000466159 C9orf72Q96LT7 481 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 SPATA33Q96N06 139 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 INO80BQ9C086 356 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-217ENST00000466159 FHDC1Q9C0D6 1143 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-217ENST00000466159 STMN4Q9H169 189 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-217ENST00000466159 XYLT2Q9H1B5 865 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 NXF1Q9UBU9 619 aaKnown RBP9.47□□□□□ -0.89
SYNE1-217ENST00000466159 POLIQ9UNA4 740 aa9.47□□□□□ -0.89
SYNE1-217ENST00000466159 A0A0G2JLL6 359 aaPredicted RBP9.46□□□□□ -0.89
SYNE1-217ENST00000466159 LGR5O75473 907 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 FSBPO95073 299 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 CALB1P05937 261 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 ETS1P14921 441 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 RAP1GAPP47736 663 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 CLCN3P51790 818 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 CAV1Q03135 178 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 LRRC14Q15048 493 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 CNGA2Q16280 664 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 P3H1Q32P28 736 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 ATF7IP2Q5U623 682 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 PPP1R2P3Q6NXS1 205 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 CCDC121Q6ZUS5 278 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 TAOK1Q7L7X3 1001 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 ARMC9Q7Z3E5 817 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 PRRT2Q7Z6L0 340 aaPredicted RBP9.46□□□□□ -0.89
SYNE1-217ENST00000466159 ERICH1Q86X53 443 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 LRRC34Q8IZ02 419 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 SERPINB12Q96P63 405 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 MINDY3Q9H8M7 445 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 PTPRHQ9HD43 1115 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 TJP2Q9UDY2 1190 aa9.46□□□□□ -0.89
SYNE1-217ENST00000466159 LIASO43766 372 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 CSDE1O75534 798 aaKnown RBP9.46□□□□□ -0.9
SYNE1-217ENST00000466159 LSM8O95777 96 aaKnown RBP9.46□□□□□ -0.9
SYNE1-217ENST00000466159 ITGBL1O95965 494 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-217ENST00000466159 KRT19P08727 400 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 IQCF3P0C7M6 154 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 CETPP11597 493 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 PROZP22891 400 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 ORC1Q13415 861 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 TMEM132AQ24JP5 1023 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 PPP1R15BQ5SWA1 713 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 WDR78Q5VTH9 848 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 MPZL3Q6UWV2 235 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 TSHZ1Q6ZSZ6 1077 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 PLPPR4Q7Z2D5 763 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 SULF1Q8IWU6 871 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 DHX37Q8IY37 1157 aaKnown RBP9.46□□□□□ -0.9
SYNE1-217ENST00000466159 CYP4X1Q8N118 509 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 MGARPQ8TDB4 240 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 HAUS1Q96CS2 278 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 RBM41Q96IZ5 413 aaKnown RBP9.46□□□□□ -0.9
SYNE1-217ENST00000466159 PDGFCQ9NRA1 345 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 RBPJLQ9UBG7 517 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 TBK1Q9UHD2 729 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 ZNF148Q9UQR1 794 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 ANK1P16157 1881 aa9.46□□□□□ -0.9
SYNE1-217ENST00000466159 H0YHG0 523 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 GOLGA8SH3BPF8 625 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 DNM1LO00429 736 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 ACKR2O00590 384 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 TJP3O95049 919 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms