RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TMPRSS4Q9NRS4 437 aa8.87□□□□□ -0.99
CD44-208ENST00000428726 ZNFX1Q9P2E3 1918 aaKnown RBP8.87□□□□□ -0.99
CD44-208ENST00000428726 MSCO60682 206 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 VIMP08670 466 aaKnown RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 CLTAP09496 248 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 CYP2B6P20813 491 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 HADHBP55084 474 aaKnown RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 PTENP60484 403 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 CLUL1Q15846 466 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 CYP4X1Q8N118 509 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 CCT8L2Q96SF2 557 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 NTPCRQ9BSD7 190 aaKnown RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 ADARB2Q9NS39 739 aaKnown RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 GRHL1Q9NZI5 618 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 AGTPBP1Q9UPW5 1226 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 ZBTB42B2RXF5 422 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 SGK1O00141 431 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 PDHXO00330 501 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 TFE3P19532 575 aaPredicted RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 ACO1P21399 889 aaKnown RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 ARL2P36404 184 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 AFF1P51825 1210 aaKnown RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 TCEAL1Q15170 157 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 CCL14Q16627 93 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 PPP6R3Q5H9R7 873 aaPredicted RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 BSPRYQ5W0U4 402 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 C1orf228Q6PIY5 440 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 FAM47EQ6ZV65 393 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 USP37Q86T82 979 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 ACOT1Q86TX2 421 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 SCUBE3Q8IX30 993 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 WDTC1Q8N5D0 677 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 STKLD1Q8NE28 680 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 NAP1L3Q99457 506 aaPredicted RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 PRMT1Q99873 361 aaKnown RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 CARD9Q9H257 536 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 METTL5Q9NRN9 209 aaKnown RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 PCDHB2Q9Y5E7 798 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 HEY1Q9Y5J3 304 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 DOCK1Q14185 1865 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 DOCK3Q8IZD9 2030 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 CNTNAP2Q9UHC6 1331 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 SPEGQ15772 3267 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 A0A087WUV0 522 aaPredicted RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 CCL15-CCL14A0A0B4J2E2 113 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 CCDC78A2IDD5 438 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 MEIS3P2A8K0S8 358 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 AVILO75366 819 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 ECEL1O95672 775 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 CETPP11597 493 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 UNGP13051 313 aaPredicted RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 CHN1P15882 459 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 ACAT1P24752 427 aaKnown RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 PTGIRP43119 386 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 NOMO3P69849 1222 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 POU5F1Q01860 360 aaKnown RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 CALCOCO2Q13137 446 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 PPP2R5EQ16537 467 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 CCL15Q16663 113 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 P3H1Q32P28 736 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 EML3Q32P44 896 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 METTL7BQ6UX53 244 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 SRRM1Q8IYB3 904 aaKnown RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 C4orf33Q8N1A6 199 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 CLEC4CQ8WTT0 213 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 DYDC1Q8WWB3 177 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 TBC1D31Q96DN5 1066 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 CDHR1Q96JP9 859 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 CPXM1Q96SM3 734 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 SNTG2Q9NY99 539 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.86□□□□□ -0.99
CD44-208ENST00000428726 SNX9Q9Y5X1 595 aa8.86□□□□□ -0.99
CD44-208ENST00000428726 PARP14Q460N5 1801 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 BHMG1C9JSJ3 638 aaPredicted RBP8.85□□□□□ -0.99
CD44-208ENST00000428726 M0QYV0 167 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 RGS16O15492 202 aaPredicted RBP8.85□□□□□ -0.99
CD44-208ENST00000428726 PHF2O75151 1096 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 RPSAP08865 295 aaKnown RBP8.85□□□□□ -0.99
CD44-208ENST00000428726 STAG3L1P0CL83 205 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 IL1R2P27930 398 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 ADORA2BP29275 332 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 CDC25CP30307 473 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 HSPA9P38646 679 aaKnown RBP8.85□□□□□ -0.99
CD44-208ENST00000428726 NAMPTP43490 491 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 GDF10P55107 478 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 PSMC1P62191 440 aaKnown RBP8.85□□□□□ -0.99
CD44-208ENST00000428726 NFX1Q12986 1120 aaKnown RBP8.85□□□□□ -0.99
CD44-208ENST00000428726 EFTUD2Q15029 972 aaKnown RBP eCLIP8.85□□□□□ -0.99
CD44-208ENST00000428726 PTPN20Q4JDL3 420 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 DUPD1Q68J44 220 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 DNAJC24Q6P3W2 148 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 ZNF365Q70YC5 407 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 CPLX4Q7Z7G2 160 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 ERICH1Q86X53 443 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 CD302Q8IX05 232 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 CCDC13Q8IYE1 715 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 ANKRD13AQ8IZ07 590 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 HASPINQ8TF76 798 aa8.85□□□□□ -0.99
CD44-208ENST00000428726 ZNF473Q8WTR7 871 aaKnown RBP8.85□□□□□ -0.99
CD44-208ENST00000428726 SPOCK2Q92563 424 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms