RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 PCDHA11Q9Y5I1 949 aa19.3■□□□□ 0.68
SDC1-203ENST00000403076 A8MXQ7 604 aa19.29■□□□□ 0.68
SDC1-203ENST00000403076 CYP26A1O43174 497 aa19.29■□□□□ 0.68
SDC1-203ENST00000403076 CILPO75339 1184 aa19.29■□□□□ 0.68
SDC1-203ENST00000403076 TYMPP19971 482 aa19.29■□□□□ 0.68
SDC1-203ENST00000403076 WARSP23381 471 aaKnown RBP19.29■□□□□ 0.68
SDC1-203ENST00000403076 NDST1P52848 882 aa19.29■□□□□ 0.68
SDC1-203ENST00000403076 LIMS2Q7Z4I7 341 aa19.29■□□□□ 0.68
SDC1-203ENST00000403076 BCL7CQ8WUZ0 217 aaPredicted RBP19.29■□□□□ 0.68
SDC1-203ENST00000403076 SYN2Q92777 582 aaPredicted RBP19.29■□□□□ 0.68
SDC1-203ENST00000403076 GPR62Q9BZJ7 368 aa19.29■□□□□ 0.68
SDC1-203ENST00000403076 AIPL1Q9NZN9 384 aa19.29■□□□□ 0.68
SDC1-203ENST00000403076 PUF60Q9UHX1 559 aaKnown RBP19.29■□□□□ 0.68
SDC1-203ENST00000403076 MSRAQ9UJ68 235 aa19.29■□□□□ 0.68
SDC1-203ENST00000403076 RWDD3Q9Y3V2 267 aa19.29■□□□□ 0.68
SDC1-203ENST00000403076 LINC01553A4QN01 128 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 SYN3O14994 580 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 PDGFRBP09619 1106 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 TKTP29401 623 aaKnown RBP19.28■□□□□ 0.68
SDC1-203ENST00000403076 CTNNB1P35222 781 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 LHX1P48742 406 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 BPIFB4P59827 614 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 KRT17Q04695 432 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 PTK2Q05397 1052 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 INCA1Q0VD86 236 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 OVOS1Q6IE37 1185 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 OSTM1Q86WC4 334 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 TDHQ8IZJ6 230 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 THEM5Q8N1Q8 247 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 KBTBD7Q8WVZ9 684 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 CLP1Q92989 425 aaKnown RBP19.28■□□□□ 0.68
SDC1-203ENST00000403076 PANX2Q96RD6 677 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 NT5C1AQ9BXI3 368 aa19.28■□□□□ 0.68
SDC1-203ENST00000403076 CYP11A1P05108 521 aa19.27■□□□□ 0.68
SDC1-203ENST00000403076 CA3P07451 260 aa19.27■□□□□ 0.68
SDC1-203ENST00000403076 SKILP12757 684 aa19.27■□□□□ 0.68
SDC1-203ENST00000403076 CLCN1P35523 988 aa19.27■□□□□ 0.68
SDC1-203ENST00000403076 BMPR1AP36894 532 aa19.27■□□□□ 0.68
SDC1-203ENST00000403076 KLHL30Q0D2K2 578 aa19.27■□□□□ 0.68
SDC1-203ENST00000403076 ORC1Q13415 861 aa19.27■□□□□ 0.68
SDC1-203ENST00000403076 TDRD12Q587J7 1177 aaKnown RBP19.27■□□□□ 0.68
SDC1-203ENST00000403076 CHRDL2Q6WN34 429 aa19.27■□□□□ 0.68
SDC1-203ENST00000403076 UNC93AQ86WB7 457 aa19.27■□□□□ 0.68
SDC1-203ENST00000403076 SPATA18Q8TC71 538 aa19.27■□□□□ 0.68
SDC1-203ENST00000403076 DDX43Q9NXZ2 648 aaKnown RBP19.27■□□□□ 0.68
SDC1-203ENST00000403076 HMGXB4Q9UGU5 601 aa19.27■□□□□ 0.68
SDC1-203ENST00000403076 CNTN6Q9UQ52 1028 aa19.27■□□□□ 0.68
SDC1-203ENST00000403076 PDE4DIPQ5VU43 2346 aa19.27■□□□□ 0.68
SDC1-203ENST00000403076 CD19P15391 556 aa19.26■□□□□ 0.67
SDC1-203ENST00000403076 LMO2P25791 158 aa19.26■□□□□ 0.67
SDC1-203ENST00000403076 YWHAHQ04917 246 aaPredicted RBP19.26■□□□□ 0.67
SDC1-203ENST00000403076 USP41Q3LFD5 358 aa19.26■□□□□ 0.67
SDC1-203ENST00000403076 E4F1Q66K89 784 aaPredicted RBP19.26■□□□□ 0.67
SDC1-203ENST00000403076 SMYD5Q6GMV2 418 aa19.26■□□□□ 0.67
SDC1-203ENST00000403076 KIAA1841Q6NSI8 718 aa19.26■□□□□ 0.67
SDC1-203ENST00000403076 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.26■□□□□ 0.67
SDC1-203ENST00000403076 IRF2BP2Q7Z5L9 587 aa19.26■□□□□ 0.67
SDC1-203ENST00000403076 WHAMMQ8TF30 809 aa19.26■□□□□ 0.67
SDC1-203ENST00000403076 TMEM176AQ96HP8 235 aa19.26■□□□□ 0.67
SDC1-203ENST00000403076 B3GALT6Q96L58 329 aa19.26■□□□□ 0.67
SDC1-203ENST00000403076 HEXIM2Q96MH2 286 aaKnown RBP19.26■□□□□ 0.67
SDC1-203ENST00000403076 TTPALQ9BTX7 342 aa19.26■□□□□ 0.67
SDC1-203ENST00000403076 ELOVL4Q9GZR5 314 aa19.26■□□□□ 0.67
SDC1-203ENST00000403076 MTUS1Q9ULD2 1270 aa19.26■□□□□ 0.67
SDC1-203ENST00000403076 STXBP5LQ9Y2K9 1186 aa19.26■□□□□ 0.67
SDC1-203ENST00000403076 GABRDO14764 452 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 NRDCO43847 1150 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 FGF18O76093 207 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 SERPING1P05155 500 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 FGFR3P22607 806 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 PCSK1P29120 753 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 HNRNPH3P31942 346 aaKnown RBP19.25■□□□□ 0.67
SDC1-203ENST00000403076 PBX2P40425 430 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 PDE6CP51160 858 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 RAD23BP54727 409 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 RAB30Q15771 203 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 TAS1R1Q7RTX1 841 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 DDX53Q86TM3 631 aaKnown RBP19.25■□□□□ 0.67
SDC1-203ENST00000403076 ACOT1Q86TX2 421 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 KLHL23Q8NBE8 558 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 SLC4A11Q8NBS3 891 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 TNIP3Q96KP6 325 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 TWNKQ96RR1 684 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 C17orf80Q9BSJ5 609 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 YBX2Q9Y2T7 364 aaKnown RBP19.25■□□□□ 0.67
SDC1-203ENST00000403076 BZW2Q9Y6E2 419 aaKnown RBP19.25■□□□□ 0.67
SDC1-203ENST00000403076 THAP12O43422 761 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 HCRTO43612 131 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 CALCAP01258 141 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 PAEPP09466 180 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 LINC00271P0C7V0 271 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 ACAT1P24752 427 aaKnown RBP19.25■□□□□ 0.67
SDC1-203ENST00000403076 GNA15P30679 374 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 ZNF132P52740 706 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 VARS2Q5ST30 1063 aaKnown RBP19.25■□□□□ 0.67
SDC1-203ENST00000403076 SLC47A2Q86VL8 602 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 LRRC8AQ8IWT6 810 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 BAG1Q99933 345 aaPredicted RBP19.25■□□□□ 0.67
SDC1-203ENST00000403076 PBX4Q9BYU1 374 aa19.25■□□□□ 0.67
SDC1-203ENST00000403076 HAUS4Q9H6D7 363 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms