RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 GPS1Q13098 491 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 PPP1R18Q6NYC8 613 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 CCDC174Q6PII3 467 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 C4orf50Q6ZRC1 276 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 C1orf186Q6ZWK4 172 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 CLNKQ7Z7G1 428 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 TRABD2AQ86V40 505 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 FBXO11Q86XK2 927 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 B4GALNT2Q8NHY0 566 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 LMO3Q8TAP4 145 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 KIFAP3Q92845 792 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 CD101Q93033 1021 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 ZNF333Q96JL9 665 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 CLPTM1LQ96KA5 538 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 KIFC3Q9BVG8 833 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 NYXQ9GZU5 481 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 STARD13Q9Y3M8 1113 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 FRMPD4Q14CM0 1322 aa10.44□□□□□ -0.74
PTCHD4-202ENST00000398738 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 HAUS5O94927 633 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 ESRRAP11474 423 aaPredicted RBP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 CYP11B1P15538 503 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 GAP43P17677 238 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 TM4SF1P30408 202 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 HOXA7P31268 230 aaPredicted RBP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 SKIV2L2P42285 1042 aaKnown RBP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 DYNLT1P63172 113 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 MOGSQ13724 837 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 STAT4Q14765 748 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 CYP1B1Q16678 543 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 CFAP157Q5JU67 520 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 FOXB2Q5VYV0 432 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 CBWD2Q8IUF1 395 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 PLEKHO2Q8TD55 490 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 SEMA4DQ92854 862 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 TTC17Q96AE7 1141 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 AMNQ9BXJ7 453 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 MAK16Q9BXY0 300 aaKnown RBP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 GPRC5CQ9NQ84 441 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 FSCN2O14926 492 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 RTN3O95197 1032 aaPredicted RBP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 SNHG28P0DPA3 235 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 TROVE2P10155 538 aaKnown RBP eCLIP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 KITP10721 976 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 SSTR1P30872 391 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 PBX2P40425 430 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 PDIA2Q13087 525 aaKnown RBP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 PPP2R5CQ13362 524 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 BMT2Q1RMZ1 405 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 LRRC74BQ6ZQY2 392 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 STXBP4Q6ZWJ1 553 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 AMIGO3Q86WK7 504 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 GALNT15Q8N3T1 639 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 HIPK4Q8NE63 616 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 CFAP61Q8NHU2 1237 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 C7orf43Q8WVR3 580 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 C10orf82Q8WW14 230 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 PSPC1Q8WXF1 523 aaKnown RBP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 MAML1Q92585 1016 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 C11orf70Q9BRQ4 267 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 OLFML3Q9NRN5 406 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 USP20Q9Y2K6 914 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 PCDHAC2Q9Y5I4 1007 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 WFS1O76024 890 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 DXOO77932 396 aaKnown RBP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 USP1O94782 785 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 GYS1P13807 737 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 AMPD1P23109 780 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 SHMT1P34896 483 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 ARSEP51690 589 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 CCNG1P51959 295 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 GAD2Q05329 585 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 KDSRQ06136 332 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 ZYXQ15942 572 aaKnown RBP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 Q3C1V9 767 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 MFN1Q8IWA4 741 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 NAP1L4Q99733 375 aaKnown RBP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 PCMTD2Q9NV79 361 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 WDR35Q9P2L0 1181 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 SLC17A7Q9P2U7 560 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 SAE1Q9UBE0 346 aaPredicted RBP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 MARCOQ9UEW3 520 aaPredicted RBP10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 VAV3Q9UKW4 847 aa10.43□□□□□ -0.74
PTCHD4-202ENST00000398738 ACADSP16219 412 aa10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 CNGA1P29973 690 aa10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 TRAF1Q13077 416 aa10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 ANKS1BQ7Z6G8 1248 aa10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 CCDC89Q8N998 374 aa10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 GRK7Q8WTQ7 553 aa10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 CFAP57Q96MR6 1250 aa10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 SEPT3Q9UH03 358 aa10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 GGA1Q9UJY5 639 aa10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 ADGRA3Q8IWK6 1321 aa10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 SLC16A4O15374 487 aa10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 RNF8O76064 485 aa10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 ENO1P06733 434 aaKnown RBP10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 CYP3A4P08684 503 aa10.42□□□□□ -0.74
PTCHD4-202ENST00000398738 TAS2R40P59535 323 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms