RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 IFT88Q13099 833 aa15.27■□□□□ 0.04
TCOF1-202ENST00000377797 RAPH1Q70E73 1250 aa15.27■□□□□ 0.04
TCOF1-202ENST00000377797 GDAP1Q8TB36 358 aa15.27■□□□□ 0.04
TCOF1-202ENST00000377797 CCT6BQ92526 530 aa15.27■□□□□ 0.04
TCOF1-202ENST00000377797 ZNF518BQ9C0D4 1074 aa15.27■□□□□ 0.04
TCOF1-202ENST00000377797 PRG3Q9Y2Y8 225 aaPredicted RBP15.27■□□□□ 0.04
TCOF1-202ENST00000377797 ACADSBP45954 432 aa15.27■□□□□ 0.03
TCOF1-202ENST00000377797 CDH8P55286 799 aa15.27■□□□□ 0.03
TCOF1-202ENST00000377797 DCAF6Q58WW2 860 aa15.27■□□□□ 0.03
TCOF1-202ENST00000377797 SHCBP1Q8NEM2 672 aa15.27■□□□□ 0.03
TCOF1-202ENST00000377797 TRAIPQ9BWF2 469 aa15.27■□□□□ 0.03
TCOF1-202ENST00000377797 VIPAS39Q9H9C1 493 aa15.27■□□□□ 0.03
TCOF1-202ENST00000377797 CYP3A43Q9HB55 503 aa15.27■□□□□ 0.03
TCOF1-202ENST00000377797 LACTBL1A8MY62 500 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 MAPK13O15264 365 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 SUN1O94901 812 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 ALDH1A1P00352 501 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 MARSP56192 900 aaKnown RBP15.26■□□□□ 0.03
TCOF1-202ENST00000377797 SYDE1Q6ZW31 735 aaPredicted RBP15.26■□□□□ 0.03
TCOF1-202ENST00000377797 CCDC197Q8NCU1 140 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 TMEM176AQ96HP8 235 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 IPO11Q9UI26 975 aaKnown RBP15.26■□□□□ 0.03
TCOF1-202ENST00000377797 ZNF862O60290 1169 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 GJB1P08034 283 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 RBP3P10745 1247 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 HNRNPH3P31942 346 aaKnown RBP15.26■□□□□ 0.03
TCOF1-202ENST00000377797 OR1G1P47890 313 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 PSEN2P49810 448 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 CACNB2Q08289 660 aaPredicted RBP15.26■□□□□ 0.03
TCOF1-202ENST00000377797 SEPT6Q14141 434 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 P3H1Q32P28 736 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 TTC31Q49AM3 519 aaPredicted RBP15.26■□□□□ 0.03
TCOF1-202ENST00000377797 SLC27A1Q6PCB7 646 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 EPS8L1Q8TE68 723 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 HNRNPLLQ8WVV9 542 aaKnown RBP15.26■□□□□ 0.03
TCOF1-202ENST00000377797 ISCUQ9H1K1 167 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 MYH3P11055 1940 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 MYH14Q7Z406 1995 aaKnown RBP15.26■□□□□ 0.03
TCOF1-202ENST00000377797 RCCD1A6NED2 376 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 ITIH2P19823 946 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 AKAP5P24588 427 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 ATICP31939 592 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 MCOLN2Q8IZK6 566 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 PCSK9Q8NBP7 692 aaKnown RBP15.26■□□□□ 0.03
TCOF1-202ENST00000377797 ATP6V1G3Q96LB4 118 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 WDR91A4D1P6 747 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 SLC15A5A6NIM6 579 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 BTBD19C9JJ37 291 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 COILP38432 576 aaPredicted RBP15.26■□□□□ 0.03
TCOF1-202ENST00000377797 FSCN1Q16658 493 aaKnown RBP15.26■□□□□ 0.03
TCOF1-202ENST00000377797 MAP7D1Q3KQU3 841 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 ZCWPW2Q504Y3 356 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 AFAP1L2Q8N4X5 818 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 MCUR1Q96AQ8 359 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 C9orf72Q96LT7 481 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 POLIQ9UNA4 740 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 LTBP3Q9NS15 1303 aa15.26■□□□□ 0.03
TCOF1-202ENST00000377797 IQANK1A0A1B0GTG1 560 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 PHF20L1A8MW92 1017 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 KRT37O76014 449 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 UPP2O95045 317 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 H2AFXP16104 143 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-202ENST00000377797 SPATS2Q86XZ4 545 aaKnown RBP15.25■□□□□ 0.03
TCOF1-202ENST00000377797 SPATA18Q8TC71 538 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 MICAL1Q8TDZ2 1067 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 SMYD2Q9NRG4 433 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 KCNN4O15554 427 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 KPNA6O60684 536 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 PROSCO94903 275 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 SLC4A1P02730 911 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 FAM200BP0CF97 657 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 INHBEP58166 350 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 PAN2Q504Q3 1202 aaKnown RBP15.25■□□□□ 0.03
TCOF1-202ENST00000377797 WDR93Q6P2C0 686 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 PID1Q7Z2X4 250 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 ZNF410Q86VK4 478 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 TMEM139Q8IV31 216 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 FAM84AQ96KN4 292 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 RSAD1Q9HA92 442 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 ZBBXA8MT70 800 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 HIF1AQ16665 826 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 KCNT1Q5JUK3 1230 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 FBXO47Q5MNV8 452 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 TAF2Q6P1X5 1199 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 EMC1Q8N766 993 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 ACTRT1Q8TDG2 376 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 DEPDC1BQ8WUY9 529 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 ATG4AQ8WYN0 398 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 ARHGEF2Q92974 986 aaKnown RBP15.25■□□□□ 0.03
TCOF1-202ENST00000377797 ARHGEF26Q96DR7 871 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 MTG1Q9BT17 334 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-202ENST00000377797 TRIM62Q9BVG3 475 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 LSM8O95777 96 aaKnown RBP15.25■□□□□ 0.03
TCOF1-202ENST00000377797 DEUP1Q05D60 604 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 MAPK7Q13164 816 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 EFHC1Q5JVL4 640 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 RBM15Q96T37 977 aaKnown RBP eCLIP15.25■□□□□ 0.03
TCOF1-202ENST00000377797 EPAS1Q99814 870 aa15.25■□□□□ 0.03
TCOF1-202ENST00000377797 FNDC3AQ9Y2H6 1198 aaKnown RBP15.25■□□□□ 0.03
TCOF1-202ENST00000377797 A0A087WUV0 522 aaPredicted RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms