RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 C4orf22Q6V702 233 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 PCYOX1LQ8NBM8 494 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 FAM151AQ8WW52 585 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 DNAJC9Q8WXX5 260 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 EME1Q96AY2 570 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 C17orf75Q9HAS0 396 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 TEKT2Q9UIF3 430 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 PIN4Q9Y237 131 aaKnown RBP11.96□□□□□ -0.5
PTPRF-203ENST00000372407 RARBP10826 455 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 CD44P16070 742 aaKnown RBP11.96□□□□□ -0.5
PTPRF-203ENST00000372407 SULT1E1P49888 294 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 NBPF20Q3BBV1 942 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 BOLA3Q53S33 107 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 PAPD7Q5XG87 772 aaKnown RBP11.96□□□□□ -0.5
PTPRF-203ENST00000372407 KDM7AQ6ZMT4 941 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 KIF2BQ8N4N8 673 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 LZICQ8WZA0 190 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 PTPRN2Q92932 1015 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 FAM118BQ9BPY3 351 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 LBHD1Q9BQE6 289 aaPredicted RBP11.96□□□□□ -0.5
PTPRF-203ENST00000372407 TARS2Q9BW92 718 aaKnown RBP11.96□□□□□ -0.5
PTPRF-203ENST00000372407 CASS4Q9NQ75 786 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 PKD2L2Q9NZM6 624 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 KIF17Q9P2E2 1029 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 DMGDHQ9UI17 866 aaKnown RBP11.96□□□□□ -0.5
PTPRF-203ENST00000372407 CAPN6Q9Y6Q1 641 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 LRRIQ3A6PVS8 624 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-203ENST00000372407 POLBP06746 335 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 STIP1P31948 543 aaKnown RBP11.95□□□□□ -0.5
PTPRF-203ENST00000372407 DNAJC3Q13217 504 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 PDK1Q15118 436 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 APPL2Q8NEU8 664 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 E2F7Q96AV8 911 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 ZSWIM1Q9BR11 485 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 MOV10L1Q9BXT6 1211 aaKnown RBP11.95□□□□□ -0.5
PTPRF-203ENST00000372407 XRN1Q8IZH2 1706 aaKnown RBP11.95□□□□□ -0.5
PTPRF-203ENST00000372407 CPB1P15086 417 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 FLOT2Q14254 428 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 EPC2Q52LR7 807 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 SETD3Q86TU7 594 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-203ENST00000372407 C3orf20Q8ND61 904 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 MYCBPAPQ8TBZ2 947 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 THAP2Q9H0W7 228 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 VPS33BQ9H267 617 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 CCDC134Q9H6E4 229 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 TASP1Q9H6P5 420 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 KCNH7Q9NS40 1196 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 MAD2L2Q9UI95 211 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 CDY2AQ9Y6F7 541 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 CDY1Q9Y6F8 540 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 CHD2O14647 1828 aaKnown RBP11.95□□□□□ -0.5
PTPRF-203ENST00000372407 HNRNPCL2B2RXH8 293 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 EXTL3O43909 919 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 ADCY3O60266 1144 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 IL18RAPO95256 599 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 ATXN8OSP0DMR3 200 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 DAB2P98082 770 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 GRB10Q13322 594 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 CENPPQ6IPU0 288 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 LRRC6Q86X45 466 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 PPIL6Q8IXY8 311 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 MDM1Q8TC05 714 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 GFM2Q969S9 779 aaKnown RBP11.95□□□□□ -0.5
PTPRF-203ENST00000372407 FHDC1Q9C0D6 1143 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-203ENST00000372407 SLC40A1Q9NP59 571 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 DUSP10Q9Y6W6 482 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 FOXN3O00409 490 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-203ENST00000372407 TRAPPC3O43617 180 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 GRAP2O75791 330 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 HMOX2P30519 316 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 GTF2H1P32780 548 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 MTM1Q13496 603 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 PTK2BQ14289 1009 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 ANO4Q32M45 955 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 ACAD10Q6JQN1 1059 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 GJB7Q6PEY0 223 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 TMA16Q96EY4 203 aaKnown RBP11.95□□□□□ -0.5
PTPRF-203ENST00000372407 LRRC4BQ9NT99 713 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 PRMT7Q9NVM4 692 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-203ENST00000372407 IRAK4Q9NWZ3 460 aa11.95□□□□□ -0.5
PTPRF-203ENST00000372407 FARP1Q9Y4F1 1045 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-203ENST00000372407 H0Y626 953 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 RGL2O15211 777 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 TRIM16O95361 564 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 MRPS35P82673 323 aaKnown RBP11.94□□□□□ -0.5
PTPRF-203ENST00000372407 VEPH1Q14D04 833 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 KDELC2Q7Z4H8 507 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 ZNF280CQ8ND82 737 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 RDM1Q8NG50 284 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 CASKIN2Q8WXE0 1202 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 PI4K2AQ9BTU6 479 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 MANSC1Q9H8J5 431 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 ARHGEF38Q9NXL2 777 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 LOC100653049A0A140TA62 436 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 IGF2BP3O00425 579 aaKnown RBP eCLIP11.94□□□□□ -0.58e-7■■□□□ 11.5
PTPRF-203ENST00000372407 AIM2O14862 343 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 MTSS1O43312 755 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 TLR2O60603 784 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 KRT34O76011 436 aa11.94□□□□□ -0.5
PTPRF-203ENST00000372407 RARGP13631 454 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms