RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 CST8O60676 142 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 GARTP22102 1010 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 RPA3P35244 121 aaPredicted RBP13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 TNFSF9P41273 254 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 MYL6P60660 151 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 EFTUD2Q15029 972 aaKnown RBP eCLIP13.6□□□□□ -0.232e-8■■■□□ 17.4
HMGCS1-201ENST00000325110 NBPF12Q5TAG4 269 aaPredicted RBP13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 CIAPIN1Q6FI81 312 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 RFX8Q6ZV50 586 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 ANKS1BQ7Z6G8 1248 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 C12orf50Q8NA57 414 aaPredicted RBP13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 TMEM35BQ8NCS4 154 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 ASAP3Q8TDY4 903 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 MAGEB18Q96M61 343 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 SLC12A4Q9UP95 1085 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 COQ4Q9Y3A0 265 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 CNTNAP1P78357 1384 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 VWA5AO00534 786 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 MGRN1O60291 552 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 SCARA3Q6AZY7 606 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 MYLK2Q9H1R3 596 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 AVENQ9NQS1 362 aaPredicted RBP13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 STK32BQ9NY57 414 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 CHMP2BQ9UQN3 213 aa13.6□□□□□ -0.23
HMGCS1-201ENST00000325110 F5H423 210 aaPredicted RBP13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 MAPK13O15264 365 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 PSTPIP1O43586 416 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 NRLP54845 237 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 SNRPFP62306 86 aaKnown RBP13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 IGBP1P78318 339 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 TNFAIP1Q13829 316 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 TAF11Q15544 211 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 XKR3Q5GH77 459 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 ECHDC2Q86YB7 292 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 EXD1Q8NHP7 514 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 TMEM109Q9BVC6 243 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 MAK16Q9BXY0 300 aaKnown RBP13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 RXFP1Q9HBX9 757 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 KIAA1586Q9HCI6 787 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 TXLNGQ9NUQ3 528 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 ZNRF3Q9ULT6 936 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 CSDE1O75534 798 aaKnown RBP13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 IVDP26440 423 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 RAP1GAPP47736 663 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 GAD2Q05329 585 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 EN1Q05925 392 aaPredicted RBP13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 TFDP1Q14186 410 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 C3orf62Q6ZUJ4 267 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 MON1BQ7L1V2 547 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 NIPA1Q7RTP0 329 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 VSIG10LQ86VR7 867 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 ACTL9Q8TC94 416 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 GINS2Q9Y248 185 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 H0YCG3 227 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 GRAP2O75791 330 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 LYPLA2O95372 231 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 CST3P01034 146 aaPredicted RBP13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 TAC1P20366 129 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 GCLCP48506 637 aaPredicted RBP13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 WDR4P57081 412 aaKnown RBP13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 PSMC1P62191 440 aaKnown RBP13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 ZNF699Q32M78 642 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 SPOCD1Q6ZMY3 1216 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 RTKN2Q8IZC4 609 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 KCTD6Q8NC69 237 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 MCM8Q9UJA3 840 aa13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.59□□□□□ -0.23
HMGCS1-201ENST00000325110 KAT6AQ92794 2004 aa13.58□□□□□ -0.23
HMGCS1-201ENST00000325110 CFAP69A5D8W1 941 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 H7C0C1 242 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 DNALI1O14645 258 aaPredicted RBP13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 TROVE2P10155 538 aaKnown RBP eCLIP13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 DPEP1P16444 411 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 ATP5OP48047 213 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 CTCFP49711 727 aaPredicted RBP13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 HIRAP54198 1017 aaPredicted RBP13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 IRX4P78413 519 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 OTUD4Q01804 1114 aaKnown RBP13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 RCOR2Q8IZ40 523 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 LRRN4Q8WUT4 740 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 RAB3IPQ96QF0 476 aaPredicted RBP13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 SUFUQ9UMX1 484 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 SCN9AQ15858 1988 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 CNTN2Q02246 1040 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 FAXCQ5TGI0 409 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 RHBDF2Q6PJF5 856 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 TRIM72Q6ZMU5 477 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 ZNF677Q86XU0 584 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 FAM71DQ8N9W8 422 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 RNF149Q8NC42 400 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 CFAP36Q96G28 342 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 ST6GALNAC4Q9H4F1 302 aa13.58□□□□□ -0.24
HMGCS1-201ENST00000325110 NOP56O00567 594 aaKnown RBP13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 LIASO43766 372 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 VNN1O95497 513 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 TBXAS1P24557 533 aaPredicted RBP13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 ADRA1DP25100 572 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 PHBP35232 272 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 PSMD6Q15008 389 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms