RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 SURF1Q15526 300 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 UAP1Q16222 522 aaPredicted RBP12.17□□□□□ -0.46
CUX1-202ENST00000292538 MARCH8Q5T0T0 291 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 IQCKQ8N0W5 287 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 C7orf31Q8N865 590 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 MORC4Q8TE76 937 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 RUBCNQ92622 972 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 EIF2AQ9BY44 585 aaKnown RBP12.17□□□□□ -0.46
CUX1-202ENST00000292538 M0QYV0 167 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 IGF2BP3O00425 579 aaKnown RBP eCLIP12.17□□□□□ -0.46
CUX1-202ENST00000292538 MEFVO15553 781 aaPredicted RBP12.17□□□□□ -0.46
CUX1-202ENST00000292538 ECEL1O95672 775 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 MYZAPP0CAP1 466 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 PROZP22891 400 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 RGS7P49802 495 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 PSMC1P62191 440 aaKnown RBP12.17□□□□□ -0.46
CUX1-202ENST00000292538 POU5F1Q01860 360 aaKnown RBP12.17□□□□□ -0.46
CUX1-202ENST00000292538 KRT17Q04695 432 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 SF3A3Q12874 501 aaKnown RBP eCLIP12.17□□□□□ -0.46
CUX1-202ENST00000292538 ZSCAN26Q16670 478 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 KRT71Q3SY84 523 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 UBAP2Q5T6F2 1119 aaKnown RBP12.17□□□□□ -0.46
CUX1-202ENST00000292538 ILDR2Q71H61 639 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 WDTC1Q8N5D0 677 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 PWWP2AQ96N64 755 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 FAM49BQ9NUQ9 324 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 SAE1Q9UBE0 346 aaPredicted RBP12.17□□□□□ -0.46
CUX1-202ENST00000292538 TTC7AQ9ULT0 858 aaPredicted RBP12.17□□□□□ -0.46
CUX1-202ENST00000292538 SNX9Q9Y5X1 595 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 ATP8B3O60423 1300 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 LRRD1A4D1F6 860 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 GOLGA8KD6RF30 607 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 B4GALT4O60513 344 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 TSPAN1O60635 241 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 MTA2O94776 668 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 KRT1P04264 644 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 CYP2C9P11712 490 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 MMP8P22894 467 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 ADCY8P40145 1251 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 HNRNPH2P55795 449 aaKnown RBP12.17□□□□□ -0.46
CUX1-202ENST00000292538 PDCLQ13371 301 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 GRB14Q14449 540 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 CDO1Q16878 200 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 FAM110CQ1W6H9 321 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 HP1BP3Q5SSJ5 553 aaPredicted RBP12.17□□□□□ -0.46
CUX1-202ENST00000292538 FOXR1Q6PIV2 292 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 TRIM72Q6ZMU5 477 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 B4GALNT4Q76KP1 1039 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 ANKS1BQ7Z6G8 1248 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 TLK2Q86UE8 772 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 RHOT1Q8IXI2 618 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 GTF3C2Q8WUA4 911 aaPredicted RBP12.17□□□□□ -0.46
CUX1-202ENST00000292538 LPIN3Q9BQK8 851 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 C10orf88Q9H8K7 445 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 DPP3Q9NY33 737 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 PARP2Q9UGN5 583 aa12.17□□□□□ -0.46
CUX1-202ENST00000292538 ANKRD65E5RJM6 399 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 PPEF2O14830 753 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 PSMA2P25787 234 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 RFC1P35251 1148 aaPredicted RBP12.16□□□□□ -0.46
CUX1-202ENST00000292538 GNGT1P63211 74 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 OGDHQ02218 1023 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 ADCY2Q08462 1091 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 CALCOCO2Q13137 446 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 MTM1Q13496 603 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 OLFML2BQ68BL8 750 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 DUPD1Q68J44 220 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 RUFY4Q6ZNE9 571 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 TMC3Q7Z5M5 1100 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 C18orf25Q96B23 403 aaPredicted RBP12.16□□□□□ -0.46
CUX1-202ENST00000292538 KATNBL1Q9H079 304 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 PIN4Q9Y237 131 aaKnown RBP12.16□□□□□ -0.46
CUX1-202ENST00000292538 SCINQ9Y6U3 715 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 IFNB1P01574 187 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 SHBGP04278 402 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 SMIM10L2AP0DMW4 78 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 SMIM10L2BP0DMW5 78 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 GUCY1A3Q02108 690 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 PTPN20Q4JDL3 420 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 AVENQ9NQS1 362 aaPredicted RBP12.16□□□□□ -0.46
CUX1-202ENST00000292538 CYTH4Q9UIA0 394 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 PPME1Q9Y570 386 aa12.16□□□□□ -0.46
CUX1-202ENST00000292538 DICER1Q9UPY3 1922 aaKnown RBP12.15□□□□□ -0.46
CUX1-202ENST00000292538 TREHO43280 583 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 HCRTO43612 131 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 IL18RAPO95256 599 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 PDGFRBP09619 1106 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 KRT3P12035 628 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 CTNNA2P26232 953 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 HSPA9P38646 679 aaKnown RBP12.15□□□□□ -0.46
CUX1-202ENST00000292538 PTGIRP43119 386 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 NDST1P52848 882 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 YARSP54577 528 aaKnown RBP12.15□□□□□ -0.46
CUX1-202ENST00000292538 DHX34Q14147 1143 aaKnown RBP12.15□□□□□ -0.46
CUX1-202ENST00000292538 PHF13Q86YI8 300 aaPredicted RBP12.15□□□□□ -0.46
CUX1-202ENST00000292538 JOSD2Q8TAC2 188 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 DDX27Q96GQ7 796 aaKnown RBP12.15□□□□□ -0.46
CUX1-202ENST00000292538 CPXM1Q96SM3 734 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 OSBPL8Q9BZF1 889 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 ELOVL4Q9GZR5 314 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms