RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 GZMAP12544 262 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 RNF169Q8NCN4 708 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 DBF4BQ8NFT6 615 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 PAWRQ96IZ0 340 aaKnown RBP19.68■□□□□ 0.74
CLN3-254ENST00000637050 WNT8AQ9H1J5 351 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 MYO1AQ9UBC5 1043 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 TBX21Q9UL17 535 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 H2AFZP0C0S5 128 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 GNA15P30679 374 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 SCNN1GP51170 649 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 GNG11P61952 73 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 INCA1Q0VD86 236 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 SYT10Q6XYQ8 523 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 H2AFVQ71UI9 128 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 TTC39CQ8N584 583 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 SEPT8Q92599 483 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 APBB2Q92870 758 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 TMEM106CQ9BVX2 250 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 ISCUQ9H1K1 167 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 GDAP2Q9NXN4 497 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 TAS2R14Q9NYV8 317 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 ATP11BQ9Y2G3 1177 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 SCN1AP35498 2009 aa19.67■□□□□ 0.74
CLN3-254ENST00000637050 BTNL10A8MVZ5 291 aa19.67■□□□□ 0.74
CLN3-254ENST00000637050 CILPO75339 1184 aa19.67■□□□□ 0.74
CLN3-254ENST00000637050 CXCL10P02778 98 aa19.67■□□□□ 0.74
CLN3-254ENST00000637050 TAF6P49848 677 aa19.67■□□□□ 0.74
CLN3-254ENST00000637050 WHAMMQ8TF30 809 aa19.67■□□□□ 0.74
CLN3-254ENST00000637050 PKNOX2Q96KN3 472 aa19.67■□□□□ 0.74
CLN3-254ENST00000637050 MMS19Q96T76 1030 aa19.67■□□□□ 0.74
CLN3-254ENST00000637050 SNX9Q9Y5X1 595 aa19.67■□□□□ 0.74
CLN3-254ENST00000637050 KPNA7A9QM74 516 aa19.66■□□□□ 0.74
CLN3-254ENST00000637050 PAEPP09466 180 aa19.66■□□□□ 0.74
CLN3-254ENST00000637050 RAD23BP54727 409 aa19.66■□□□□ 0.74
CLN3-254ENST00000637050 GALCP54803 685 aa19.66■□□□□ 0.74
CLN3-254ENST00000637050 SV2CQ496J9 727 aa19.66■□□□□ 0.74
CLN3-254ENST00000637050 ZNF394Q53GI3 561 aa19.66■□□□□ 0.74
CLN3-254ENST00000637050 DNAAF5Q86Y56 855 aa19.66■□□□□ 0.74
CLN3-254ENST00000637050 ZNF606Q8WXB4 792 aa19.66■□□□□ 0.74
CLN3-254ENST00000637050 SCLYQ96I15 445 aa19.66■□□□□ 0.74
CLN3-254ENST00000637050 WDR24Q96S15 920 aa19.66■□□□□ 0.74
CLN3-254ENST00000637050 PPP1R12CQ9BZL4 782 aa19.66■□□□□ 0.74
CLN3-254ENST00000637050 DNAI1Q9UI46 699 aa19.66■□□□□ 0.74
CLN3-254ENST00000637050 SALL4Q9UJQ4 1053 aa19.66■□□□□ 0.74
CLN3-254ENST00000637050 BARX2Q9UMQ3 279 aaPredicted RBP19.66■□□□□ 0.74
CLN3-254ENST00000637050 ENPP3O14638 875 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 SPTLC1O15269 473 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 FANCGO15287 622 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 RTN2O75298 545 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 CYP2C18P33260 490 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 CCL23P55773 120 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 LILRA4P59901 499 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 GRIK3Q13003 919 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 LRRC26Q2I0M4 334 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 ZNF569Q5MCW4 686 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.65■□□□□ 0.74
CLN3-254ENST00000637050 LIMS2Q7Z4I7 341 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 SECISBP2LQ93073 1101 aaKnown RBP19.65■□□□□ 0.74
CLN3-254ENST00000637050 ELAC1Q9H777 363 aaKnown RBP19.65■□□□□ 0.74
CLN3-254ENST00000637050 PAXBP1Q9Y5B6 917 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 MACROD2A1Z1Q3 448 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 TMCO5BA8MYB1 307 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 THAP12O43422 761 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 CYP1A1P04798 512 aaPredicted RBP19.65■□□□□ 0.74
CLN3-254ENST00000637050 CLTBP09497 229 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 TMEM253P0C7T8 217 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 IBSPP21815 317 aaPredicted RBP19.65■□□□□ 0.74
CLN3-254ENST00000637050 RPL9P32969 192 aaKnown RBP19.65■□□□□ 0.74
CLN3-254ENST00000637050 CLEC16AQ2KHT3 1053 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 SOWAHAQ2M3V2 549 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 TCTN1Q2MV58 587 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 TRIM72Q6ZMU5 477 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 NECAB2Q7Z6G3 386 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 RNF10Q8N5U6 811 aaKnown RBP19.65■□□□□ 0.74
CLN3-254ENST00000637050 SLC4A11Q8NBS3 891 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 KIF18AQ8NI77 898 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 ZNF592Q92610 1267 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 TWNKQ96RR1 684 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 ZSWIM1Q9BR11 485 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 ELOVL4Q9GZR5 314 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 TMEM161AQ9NX61 479 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 HMGXB4Q9UGU5 601 aa19.65■□□□□ 0.74
CLN3-254ENST00000637050 ANKRD62A6NC57 917 aa19.64■□□□□ 0.73
CLN3-254ENST00000637050 POMCP01189 267 aa19.64■□□□□ 0.73
CLN3-254ENST00000637050 FTLP02792 175 aaPredicted RBP19.64■□□□□ 0.73
CLN3-254ENST00000637050 UNGP13051 313 aaPredicted RBP19.64■□□□□ 0.73
CLN3-254ENST00000637050 GLB1LQ6UWU2 654 aa19.64■□□□□ 0.73
CLN3-254ENST00000637050 SLC35F6Q8N357 371 aa19.64■□□□□ 0.73
CLN3-254ENST00000637050 TMEM176AQ96HP8 235 aa19.64■□□□□ 0.73
CLN3-254ENST00000637050 MRPL45Q9BRJ2 306 aaKnown RBP19.64■□□□□ 0.73
CLN3-254ENST00000637050 PRDM10Q9NQV6 1147 aa19.64■□□□□ 0.73
CLN3-254ENST00000637050 TMEM39AQ9NV64 488 aa19.64■□□□□ 0.73
CLN3-254ENST00000637050 PUF60Q9UHX1 559 aaKnown RBP19.64■□□□□ 0.73
CLN3-254ENST00000637050 A0A0A6YYK5 440 aaPredicted RBP19.63■□□□□ 0.73
CLN3-254ENST00000637050 PODXLO00592 558 aa19.63■□□□□ 0.73
CLN3-254ENST00000637050 TACC1O75410 805 aa19.63■□□□□ 0.73
CLN3-254ENST00000637050 CFHP08603 1231 aa19.63■□□□□ 0.73
CLN3-254ENST00000637050 BRD2P25440 801 aaKnown RBP19.63■□□□□ 0.73
CLN3-254ENST00000637050 CLCNKBP51801 687 aa19.63■□□□□ 0.73
CLN3-254ENST00000637050 NDST1P52848 882 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms