RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 DSC3Q14574 896 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 WHAMMP3Q1A5X7 153 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 NAA35Q5VZE5 725 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 TRAF7Q6Q0C0 670 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 LRRC52Q8N7C0 313 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 MNS1Q8NEH6 495 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 WHAMMQ8TF30 809 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 CPA5Q8WXQ8 436 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 TWNKQ96RR1 684 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 GOLPH3Q9H4A6 298 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 HMGXB4Q9UGU5 601 aa17.99■□□□□ 0.47
CLN3-252ENST00000636907 BRCA2P51587 3418 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 PIRO00625 290 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 XPOTO43592 962 aaKnown RBP17.98■□□□□ 0.47
CLN3-252ENST00000636907 HSPA6P17066 643 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 CYP3A5P20815 502 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 RAD23BP54727 409 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 NOMO3P69849 1222 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 CENPCQ03188 943 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 SOX4Q06945 474 aaPredicted RBP17.98■□□□□ 0.47
CLN3-252ENST00000636907 TCEAL1Q15170 157 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 MEI1Q5TIA1 1274 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 SLFN11Q7Z7L1 901 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 RHOT2Q8IXI1 618 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 HACE1Q8IYU2 909 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 TFAP2BQ92481 460 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 LPPQ93052 612 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 ZNF653Q96CK0 615 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 ZFP42Q96MM3 310 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 MMS19Q96T76 1030 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 GOLGA2P5Q9HBQ8 144 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 CTTNBP2NLQ9P2B4 639 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 CHORDC1Q9UHD1 332 aaPredicted RBP17.98■□□□□ 0.47
CLN3-252ENST00000636907 GTF3C4Q9UKN8 822 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 SQORQ9Y6N5 450 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 SCN1AP35498 2009 aa17.98■□□□□ 0.47
CLN3-252ENST00000636907 CYP1A2P05177 515 aa17.97■□□□□ 0.47
CLN3-252ENST00000636907 CCL5P13501 91 aa17.97■□□□□ 0.47
CLN3-252ENST00000636907 NSFP46459 744 aaKnown RBP17.97■□□□□ 0.47
CLN3-252ENST00000636907 ORC1Q13415 861 aa17.97■□□□□ 0.47
CLN3-252ENST00000636907 NAA30Q147X3 362 aaPredicted RBP17.97■□□□□ 0.47
CLN3-252ENST00000636907 MRPL10Q7Z7H8 261 aaKnown RBP17.97■□□□□ 0.47
CLN3-252ENST00000636907 MCOLN2Q8IZK6 566 aa17.97■□□□□ 0.47
CLN3-252ENST00000636907 USP38Q8NB14 1042 aa17.97■□□□□ 0.47
CLN3-252ENST00000636907 SLC4A11Q8NBS3 891 aa17.97■□□□□ 0.47
CLN3-252ENST00000636907 PPP1R10Q96QC0 940 aaKnown RBP17.97■□□□□ 0.47
CLN3-252ENST00000636907 ELOVL4Q9GZR5 314 aa17.97■□□□□ 0.47
CLN3-252ENST00000636907 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.97■□□□□ 0.47
CLN3-252ENST00000636907 PACSIN2Q9UNF0 486 aaPredicted RBP17.97■□□□□ 0.47
CLN3-252ENST00000636907 HYOU1Q9Y4L1 999 aa17.97■□□□□ 0.47
CLN3-252ENST00000636907 SNX9Q9Y5X1 595 aa17.97■□□□□ 0.47
CLN3-252ENST00000636907 V9GYY5 206 aaPredicted RBP17.97■□□□□ 0.47
CLN3-252ENST00000636907 ZNF185O15231 689 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 PAEPP09466 180 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 PRLRP16471 622 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 MLH1P40692 756 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 CDK7P50613 346 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 HADHBP55084 474 aaKnown RBP17.96■□□□□ 0.47
CLN3-252ENST00000636907 INCA1Q0VD86 236 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 MBTPS1Q14703 1052 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 AGMOQ6ZNB7 445 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 DAAM2Q86T65 1068 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 CEP112Q8N8E3 955 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 GSTCDQ8NEC7 633 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 OSBPL9Q96SU4 736 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 GAD1Q99259 594 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 TRAIPQ9BWF2 469 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 RNF208Q9H0X6 261 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 OGDHLQ9ULD0 1010 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 BARX2Q9UMQ3 279 aaPredicted RBP17.96■□□□□ 0.47
CLN3-252ENST00000636907 BUB1BO60566 1050 aaPredicted RBP17.96■□□□□ 0.47
CLN3-252ENST00000636907 ZNF623O75123 536 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 TADA3O75528 432 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 CD19P15391 556 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 ATF7P17544 494 aaPredicted RBP17.96■□□□□ 0.47
CLN3-252ENST00000636907 RAB27AP51159 221 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 PTPROQ16827 1216 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 MON1BQ7L1V2 547 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 SYCE1Q8N0S2 351 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 CAPZA3Q96KX2 299 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 PSMB7Q99436 277 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 ADAM2Q99965 735 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 MRPL45Q9BRJ2 306 aaKnown RBP17.96■□□□□ 0.47
CLN3-252ENST00000636907 NUP85Q9BW27 656 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 FAM124BQ9H5Z6 455 aaPredicted RBP17.96■□□□□ 0.47
CLN3-252ENST00000636907 CNOT8Q9UFF9 292 aaKnown RBP17.96■□□□□ 0.47
CLN3-252ENST00000636907 PCDHGC3Q9UN70 934 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 GIT1Q9Y2X7 761 aa17.96■□□□□ 0.47
CLN3-252ENST00000636907 DYNC1I1O14576 645 aa17.95■□□□□ 0.46
CLN3-252ENST00000636907 MTA2O94776 668 aa17.95■□□□□ 0.46
CLN3-252ENST00000636907 AFF1P51825 1210 aaKnown RBP17.95■□□□□ 0.46
CLN3-252ENST00000636907 NDST1P52848 882 aa17.95■□□□□ 0.46
CLN3-252ENST00000636907 C2CD6Q53TS8 623 aa17.95■□□□□ 0.46
CLN3-252ENST00000636907 TTC39CQ8N584 583 aa17.95■□□□□ 0.46
CLN3-252ENST00000636907 COG1Q8WTW3 980 aa17.95■□□□□ 0.46
CLN3-252ENST00000636907 TMEM176AQ96HP8 235 aa17.95■□□□□ 0.46
CLN3-252ENST00000636907 ZNF560Q96MR9 790 aa17.95■□□□□ 0.46
CLN3-252ENST00000636907 MIOSQ9NXC5 875 aa17.95■□□□□ 0.46
CLN3-252ENST00000636907 STXBP5LQ9Y2K9 1186 aa17.95■□□□□ 0.46
CLN3-252ENST00000636907 A0A0U1RQF3 1178 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms