RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 MTIF2P46199 727 aaKnown RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 SPAG1Q07617 926 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 MGAT3Q09327 533 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 FAAP100Q0VG06 881 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 KCNJ12Q14500 433 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 NOLC1Q14978 699 aaKnown RBP eCLIP5.77□□□□□ -1.49
LIG3-210ENST00000588109 NCAPHQ15003 741 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 FAM187BQ17R55 369 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 LRRC26Q2I0M4 334 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 TRIM71Q2Q1W2 868 aaKnown RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 ZCWPW2Q504Y3 356 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 FBXO47Q5MNV8 452 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 COL13A1Q5TAT6 717 aaPredicted RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 TWF2Q6IBS0 349 aaKnown RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 FAM117BQ6P1L5 589 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 SLC39A4Q6P5W5 647 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 NOTUMQ6P988 496 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 FOXR2Q6PJQ5 311 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 MPZL3Q6UWV2 235 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 TSHZ1Q6ZSZ6 1077 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 FAM228AQ86W67 206 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 CDR2LQ86X02 465 aaPredicted RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 USP38Q8NB14 1042 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 XXYLT1Q8NBI6 393 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 TMEM40Q8WWA1 233 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 KCNN1Q92952 543 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 SAAL1Q96ER3 474 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 ABHD8Q96I13 439 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 CNOT6LQ96LI5 555 aaKnown RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 DMRTB1Q96MA1 342 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 MED15Q96RN5 788 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 ACO2Q99798 780 aaKnown RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 DUSP9Q99956 384 aaKnown RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 ADPGKQ9BRR6 497 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 CBWD1Q9BRT8 395 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 PBX4Q9BYU1 374 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 TRIM6Q9C030 488 aaPredicted RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 HIPK3Q9H422 1215 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 THAP9Q9H5L6 903 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 GRPEL1Q9HAV7 217 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 SAMSN1Q9NSI8 373 aaKnown RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 AGPAT5Q9NUQ2 364 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 HSPBP1Q9NZL4 362 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 PRKAG2Q9UGJ0 569 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 FOXD3Q9UJU5 478 aaPredicted RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 DCTN4Q9UJW0 460 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 AGO2Q9UKV8 859 aaKnown RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 TNFSF13BQ9Y275 285 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 NOC2LQ9Y3T9 749 aaKnown RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 BRCA2P51587 3418 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 A0A0B4J269 797 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 A0A1B0GUA9 196 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 ZNF233A6NK53 670 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 EREGO14944 169 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 SLC16A3O15427 465 aaKnown RBP5.76□□□□□ -1.49
LIG3-210ENST00000588109 EXTL3O43909 919 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 AKAP3O75969 853 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 NPTXRO95502 500 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 LDHAP00338 332 aaKnown RBP5.76□□□□□ -1.49
LIG3-210ENST00000588109 TPM3P06753 285 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 MCF2P10911 925 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 KRT13P13646 458 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 IBSPP21815 317 aaPredicted RBP5.76□□□□□ -1.49
LIG3-210ENST00000588109 EEF1GP26641 437 aaKnown RBP5.76□□□□□ -1.49
LIG3-210ENST00000588109 ADSSP30520 456 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 AXLP30530 894 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 CD52P31358 61 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 CASP4P49662 377 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 ACOT2P49753 483 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 MRE11P49959 708 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 CCL23P55773 120 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 OSTNP61366 133 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 RBL2Q08999 1139 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 MYBPC2Q14324 1141 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 LPIN1Q14693 890 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 SNRNP35Q16560 246 aaKnown RBP5.76□□□□□ -1.49
LIG3-210ENST00000588109 NFIL3Q16649 462 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 UVSSAQ2YD98 709 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 DCAF4L1Q3SXM0 396 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 FILIP1LQ4L180 1135 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 TCP11X2Q5H9J9 407 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 DCAF17Q5H9S7 520 aaPredicted RBP5.76□□□□□ -1.49
LIG3-210ENST00000588109 CDKAL1Q5VV42 579 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 TCERG1LQ5VWI1 586 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 EEF1DP3Q658K8 133 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 SLC27A1Q6PCB7 646 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 LRRC55Q6ZSA7 311 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 FILIP1Q7Z7B0 1213 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 USP37Q86T82 979 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 C12orf56Q8IXR9 622 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 FAM186BQ8IYM0 893 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 THNSL1Q8IYQ7 743 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 GPD1LQ8N335 351 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 CEP120Q8N960 986 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 ANP32BQ92688 251 aaKnown RBP5.76□□□□□ -1.49
LIG3-210ENST00000588109 CCDC51Q96ER9 411 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 ZBTB45Q96K62 511 aaPredicted RBP5.76□□□□□ -1.49
LIG3-210ENST00000588109 FAM213AQ9BRX8 229 aa5.76□□□□□ -1.49
LIG3-210ENST00000588109 NOC4LQ9BVI4 516 aaKnown RBP5.76□□□□□ -1.49
LIG3-210ENST00000588109 IFIH1Q9BYX4 1025 aaKnown RBP5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms