RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CLLU1OSQ5K130 101 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 NOP9Q86U38 636 aaKnown RBP14.63□□□□□ -0.07
CCDC40-209ENST00000573474 ZNF677Q86XU0 584 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 RPUSD2Q8IZ73 545 aaKnown RBP14.63□□□□□ -0.07
CCDC40-209ENST00000573474 TMEM199Q8N511 208 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 SDCBP2Q9H190 292 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 PCDHA13Q9Y5I0 950 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 SNX9Q9Y5X1 595 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 TANC1Q9C0D5 1861 aa14.63□□□□□ -0.07
CCDC40-209ENST00000573474 PODXLO00592 558 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 FAM163BP0C2L3 166 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 FGFR1P11362 822 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 CHRNB2P17787 502 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 PAX3P23760 479 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 RAP1GAPP47736 663 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 CDR2Q01850 454 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 TUSC3Q13454 348 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 MFSD5Q6N075 450 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 ALKBH5Q6P6C2 394 aaKnown RBP14.62□□□□□ -0.07
CCDC40-209ENST00000573474 ZNF662Q6ZS27 426 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 KIAA1328Q86T90 577 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 NPAS4Q8IUM7 802 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 GLYCTKQ8IVS8 523 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 OLIG1Q8TAK6 271 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 LNX1Q8TBB1 728 aaPredicted RBP14.62□□□□□ -0.07
CCDC40-209ENST00000573474 SLC20A1Q8WUM9 679 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 RSPH1Q8WYR4 309 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 DDX1Q92499 740 aaKnown RBP14.62□□□□□ -0.07
CCDC40-209ENST00000573474 ACP6Q9NPH0 428 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 NAGPAQ9UK23 515 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 BARX2Q9UMQ3 279 aaPredicted RBP14.62□□□□□ -0.07
CCDC40-209ENST00000573474 NENFQ9UMX5 172 aa14.62□□□□□ -0.07
CCDC40-209ENST00000573474 ABHD14A-ACY1A0A1B0GW23 586 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 CASTOR2A6NHX0 329 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 SPTLC1O15269 473 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 CILPO75339 1184 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 TACC1O75410 805 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 PFKMP08237 780 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 PAEPP09466 180 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 ITGB8P26012 769 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 GNA15P30679 374 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 CLCNKBP51801 687 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 VAV2P52735 878 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 FMO1Q01740 532 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 INCA1Q0VD86 236 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 UPP1Q16831 310 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 CCDC122Q5T0U0 273 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 TAF3Q5VWG9 929 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 DPH6Q7L8W6 267 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 LIMS2Q7Z4I7 341 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 ABI1Q8IZP0 508 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 CRIPAKQ8N1N5 446 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 TOP6BLQ8N6T0 577 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 VWCEQ96DN2 955 aa14.61□□□□□ -0.07
CCDC40-209ENST00000573474 SEPT11Q9NVA2 429 aaKnown RBP14.61□□□□□ -0.07
CCDC40-209ENST00000573474 HUS1O60921 280 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 EFCAB14O75071 495 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 MMEP08473 750 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 CSF2RAP15509 400 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 RAD23BP54727 409 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 SOWAHAQ2M3V2 549 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 ARHGAP29Q52LW3 1261 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 DCLRE1AQ6PJP8 1040 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 UNC93AQ86WB7 457 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 APPL2Q8NEU8 664 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 WHAMMQ8TF30 809 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 TMEM176AQ96HP8 235 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 CASD1Q96PB1 797 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 TSGA10Q9BZW7 698 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 DNAI2Q9GZS0 605 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 TBC1D13Q9NVG8 400 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 PRKAG2Q9UGJ0 569 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 KIAA1257Q9ULG3 409 aa14.6□□□□□ -0.07
CCDC40-209ENST00000573474 SCN5AQ14524 2016 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 CYB561D2O14569 222 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 PJA2O43164 708 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 THAP12O43422 761 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 KRT86O43790 486 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 CALCAP01258 141 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 GZMAP12544 262 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 ARHGAP25P42331 645 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 NDST1P52848 882 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 RNASELQ05823 741 aaKnown RBP14.59□□□□□ -0.07
CCDC40-209ENST00000573474 DSC1Q08554 894 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 KIF5AQ12840 1032 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 PTPN14Q15678 1187 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 ZNF394Q53GI3 561 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 DSTYKQ6XUX3 929 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 TRIM72Q6ZMU5 477 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 SLC4A11Q8NBS3 891 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 ZNF606Q8WXB4 792 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 SENP8Q96LD8 212 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 FAM193BQ96PV7 902 aaPredicted RBP14.59□□□□□ -0.07
CCDC40-209ENST00000573474 PCDHB18PQ96TA0 734 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 MRPL45Q9BRJ2 306 aaKnown RBP14.59□□□□□ -0.07
CCDC40-209ENST00000573474 NT5C1AQ9BXI3 368 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 ELOVL4Q9GZR5 314 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 PDCL3Q9H2J4 239 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 SNX25Q9H3E2 840 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 LZTFL1Q9NQ48 299 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms