RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 AKT3Q9Y243 479 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 TRIM17Q9Y577 477 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 SPO11Q9Y5K1 396 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 RNF123Q5XPI4 1314 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 PPIP5K1Q6PFW1 1433 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 XIRP2A4UGR9 3374 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 TCRBV5S4A2TA0A5A2 114 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 TMEM110-MUSTN1A8MSY1 372 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 TRIM38O00635 465 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 GSC2O15499 205 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 ZBED4O75132 1171 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 SOAT2O75908 522 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 TMEM63AO94886 807 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 BAG2O95816 211 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 CLTBP09497 229 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 CSF1P09603 554 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 RARAP10276 462 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 OSMP13725 252 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 ATP6V1B1P15313 513 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 HDCP19113 662 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 SLC9A1P19634 815 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 TGM1P22735 817 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 EEF1GP26641 437 aaKnown RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 AOAHP28039 575 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 PHKA1P46020 1223 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 MAP2K6P52564 334 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 MAPK10P53779 464 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 SLC12A2P55011 1212 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 HUNKP57058 714 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 NKX6-1P78426 367 aaPredicted RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 TMF1P82094 1093 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 OCRLQ01968 901 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 TBC1D8BQ0IIM8 1120 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 DAG1Q14118 895 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 SMC1AQ14683 1233 aaKnown RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 MYBPC3Q14896 1274 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 PLCL1Q15111 1095 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 PPA1Q15181 289 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 SEC23AQ15436 765 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 NKG7Q16617 165 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 TSTQ16762 297 aaKnown RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 VWA3BQ502W6 1294 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 TOR2AQ5JU69 321 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 ZBTB37Q5TC79 503 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 ANGEL2Q5VTE6 544 aaKnown RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 HAUS3Q68CZ6 603 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 TMEM132EQ6IEE7 984 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 PSAPL1Q6NUJ1 521 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 RGMBQ6NW40 437 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 SLC30A6Q6NXT4 461 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 RSPO2Q6UXX9 243 aaPredicted RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 USP53Q70EK8 1073 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 USP51Q70EK9 711 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 NUP54Q7Z3B4 507 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 RTN4RL1Q86UN2 441 aaPredicted RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 AMIGO3Q86WK7 504 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 MRPL41Q8IXM3 137 aaKnown RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 PLD6Q8N2A8 252 aaKnown RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 MIER2Q8N344 545 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 ADCY4Q8NFM4 1077 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 KLHDC4Q8TBB5 520 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 MGARPQ8TDB4 240 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 FNIP1Q8TF40 1166 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 TSPEARQ8WU66 669 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 MYLIPQ8WY64 445 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 SEPT1Q8WYJ6 367 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 SSH1Q8WYL5 1049 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 ZUFSPQ96AP4 578 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 DHRS1Q96LJ7 313 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 JAKMIP1Q96N16 626 aaKnown RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 PNMA5Q96PV4 448 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 C7orf25Q9BPX7 421 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 PHF20Q9BVI0 1012 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 USP26Q9BXU7 913 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 CD244Q9BZW8 370 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 WNT10AQ9GZT5 417 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 PAIP1Q9H074 479 aaKnown RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 OR10A4Q9H209 315 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 KCNH6Q9H252 994 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 ADAM7Q9H2U9 754 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 TSPY26PQ9H489 355 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 EPS8L2Q9H6S3 715 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 AKTIPQ9H8T0 292 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 MLXIPQ9HAP2 919 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 CYP4F11Q9HBI6 524 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 KCND1Q9NSA2 647 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 WHRNQ9P202 907 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 COL20A1Q9P218 1284 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 C5AR2Q9P296 337 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 MYO1AQ9UBC5 1043 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 SLC6A14Q9UN76 642 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 RRP15Q9Y3B9 282 aaKnown RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 KNSTRNQ9Y448 316 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 USP47Q96K76 1375 aa3.35□□□□□ -1.87
VPS35-209ENST00000568642 HELZ2Q9BYK8 2649 aaKnown RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 ZNF646O15015 1829 aaPredicted RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 AFDNP55196 1824 aaKnown RBP3.35□□□□□ -1.87
VPS35-209ENST00000568642 CACNA1HO95180 2353 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 DNAH12Q6ZR08 3092 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 BCORQ6W2J9 1755 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms