RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 FSTL4Q6MZW2 842 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 DRICH1Q6PGQ1 229 aaPredicted RBP2.9□□□□□ -1.95
SPG11-223ENST00000560858 SLC4A10Q6U841 1118 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 RUFY3Q7L099 469 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 OVCH1Q7RTY7 1134 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 CNTROBQ8N137 903 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 SH2D3CQ8N5H7 860 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 IL17REQ8NFR9 667 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 HNRNPLLQ8WVV9 542 aaKnown RBP2.9□□□□□ -1.95
SPG11-223ENST00000560858 ASB10Q8WXI3 467 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 PIBF1Q8WXW3 757 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 ZBTB9Q96C00 473 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 KIF1BPQ96EK5 621 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 MAGEB10Q96LZ2 347 aaPredicted RBP2.9□□□□□ -1.95
SPG11-223ENST00000560858 LSM14BQ9BX40 385 aaKnown RBP2.9□□□□□ -1.95
SPG11-223ENST00000560858 TM6SF1Q9BZW5 370 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 ENKD1Q9H0I2 346 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 SPTLC3Q9NUV7 552 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 SLC17A6Q9P2U8 582 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 SNX14Q9Y5W7 946 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.9□□□□□ -1.95
SPG11-223ENST00000560858 FPGT-TNNI3KV9GXZ4 949 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 XIRP1Q702N8 1843 aaKnown RBP2.9□□□□□ -1.95
SPG11-223ENST00000560858 MYO5AQ9Y4I1 1855 aaKnown RBP2.9□□□□□ -1.95
SPG11-223ENST00000560858 UTYO14607 1347 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 ELP1O95163 1332 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 CNTNAP2Q9UHC6 1331 aa2.9□□□□□ -1.95
SPG11-223ENST00000560858 CICQ96RK0 1608 aaPredicted RBP2.9□□□□□ -1.95
SPG11-223ENST00000560858 AKAP11Q9UKA4 1901 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 MYH13Q9UKX3 1938 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 CGB1A6NKQ9 187 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 KDM6AO15550 1401 aaPredicted RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 STX6O43752 255 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 EFCAB14O75071 495 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 ALDH1L1O75891 902 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 GLRX3O76003 335 aaKnown RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 LETM1O95202 739 aaPredicted RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 LARGE1O95461 756 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 NPTXRO95502 500 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 C6orf222P0C671 652 aaPredicted RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 NCLP19338 710 aaKnown RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 FDXRP22570 491 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 AMPHP49418 695 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 EIF4A1P60842 406 aaKnown RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 HMGN5P82970 282 aaKnown RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 OCA2Q04671 838 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 TAF7Q15545 349 aaPredicted RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 SPDYE7PQ495Y7 208 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 PDCD4Q53EL6 469 aaKnown RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 KLHL22Q53GT1 634 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 FAM209AQ5JX71 171 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 BEND3Q5T5X7 828 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 VPS53Q5VIR6 699 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 TIGD7Q6NT04 549 aaPredicted RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 RBM43Q6ZSC3 357 aaKnown RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 PPP1R42Q7Z4L9 355 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 XYLT1Q86Y38 959 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 ERC1Q8IUD2 1116 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 MYRIPQ8NFW9 859 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 DNAAF4Q8WXU2 420 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 ZSCAN31Q96LW9 406 aaPredicted RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 BOCQ9BWV1 1114 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 CHMP4AQ9BY43 222 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 UPF3BQ9BZI7 483 aaKnown RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 ALDH8A1Q9H2A2 487 aaPredicted RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 USP36Q9P275 1121 aaKnown RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 LRIT1Q9P2V4 623 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 USP25Q9UHP3 1055 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 LIMCH1Q9UPQ0 1083 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 MTMR6Q9Y217 621 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 ZSCAN21Q9Y5A6 473 aaPredicted RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 ATP6V1DQ9Y5K8 247 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 TNPO3Q9Y5L0 923 aaKnown RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 ARHGEF17Q96PE2 2063 aaPredicted RBP2.89□□□□□ -1.95
SPG11-223ENST00000560858 MYH6P13533 1939 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 DLEC1Q9Y238 1755 aa2.89□□□□□ -1.95
SPG11-223ENST00000560858 TMEM94Q12767 1356 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 PALLDQ8WX93 1383 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 PHLPP1O60346 1717 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 ZNF609O15014 1411 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 DCCP43146 1447 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 BCORQ6W2J9 1755 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 HIP1O00291 1037 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 C1QL1O75973 258 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 CDKL5O76039 1030 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 CFBP00751 764 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 CYP17A1P05093 508 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 TPM3P06753 285 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 ZBTB48P10074 688 aaPredicted RBP2.88□□□□□ -1.95
SPG11-223ENST00000560858 SYT1P21579 422 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 GZMKP49863 264 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 KIF11P52732 1056 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 SRSF7Q16629 238 aaKnown RBP eCLIP2.88□□□□□ -1.95
SPG11-223ENST00000560858 ARHGAP44Q17R89 818 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 EFCAB12Q6NXP0 572 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 Q6ZNX1 250 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 NOL8Q76FK4 1167 aaKnown RBP2.88□□□□□ -1.95
SPG11-223ENST00000560858 PTF1AQ7RTS3 328 aa2.88□□□□□ -1.95
SPG11-223ENST00000560858 SMAP1Q8IYB5 467 aaPredicted RBP2.88□□□□□ -1.95
SPG11-223ENST00000560858 ZBTB38Q8NAP3 1195 aaPredicted RBP2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms