RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 CFHP08603 1231 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 ARF4P18085 180 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-208ENST00000553868 TRIM21P19474 475 aaKnown RBP15.6■□□□□ 0.09
SHMT2-208ENST00000553868 MTHFRP42898 656 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 FMO5P49326 533 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 MYL7Q01449 175 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 ITIH3Q06033 890 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 TDGQ13569 410 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 EXOC3L4Q17RC7 722 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 PDE12Q6L8Q7 609 aaKnown RBP15.6■□□□□ 0.09
SHMT2-208ENST00000553868 NOTUMQ6P988 496 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 ZNF397Q8NF99 534 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-208ENST00000553868 NEK11Q8NG66 645 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 PARD3BQ8TEW8 1205 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 EDEM3Q9BZQ6 932 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 CDT1Q9H211 546 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 PDZD7Q9H5P4 517 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 MMRN2Q9H8L6 949 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 NCDNQ9UBB6 729 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 LRFN2Q9ULH4 789 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 DUSP12Q9UNI6 340 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 USP20Q9Y2K6 914 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 DAAM1Q9Y4D1 1078 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 FRYQ5TBA9 3013 aa15.6■□□□□ 0.09
SHMT2-208ENST00000553868 ABLIM1O14639 778 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 IL18RAPO95256 599 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 TRIM49P0CI25 452 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 TRIM49CP0CI26 452 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 PBX3P40426 434 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 ACOT2P49753 483 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 AP3M2P53677 418 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 TSR1Q2NL82 804 aaKnown RBP15.59■□□□□ 0.09
SHMT2-208ENST00000553868 VARS2Q5ST30 1063 aaKnown RBP15.59■□□□□ 0.09
SHMT2-208ENST00000553868 SLC27A1Q6PCB7 646 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 BRSK2Q8IWQ3 736 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 PLCD3Q8N3E9 789 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 CCDC112Q8NEF3 446 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 CCDC127Q96BQ5 260 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 HAPLN2Q9GZV7 340 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 TMX1Q9H3N1 280 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 AGPAT5Q9NUQ2 364 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 PADI3Q9ULW8 664 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 CA14Q9ULX7 337 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 SIK3Q9Y2K2 1263 aa15.59■□□□□ 0.09
SHMT2-208ENST00000553868 A0A1W2PQJ5 194 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 TTLL13PA6NNM8 815 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 CSDE1O75534 798 aaKnown RBP15.58■□□□□ 0.08
SHMT2-208ENST00000553868 CLTAP09496 248 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 SDHBP21912 280 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 RFX1P22670 979 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 MXI1P50539 228 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 EEF1DP3Q658K8 133 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 KIAA1841Q6NSI8 718 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 CPB2Q96IY4 423 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 LSM14BQ9BX40 385 aaKnown RBP15.58■□□□□ 0.08
SHMT2-208ENST00000553868 RPF1Q9H9Y2 349 aaKnown RBP15.58■□□□□ 0.08
SHMT2-208ENST00000553868 KCNK12Q9HB15 430 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 CDHR5Q9HBB8 845 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 TMEM8AQ9HCN3 771 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 PLCB1Q9NQ66 1216 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 RNF216Q9NWF9 866 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-208ENST00000553868 CPSF3Q9UKF6 684 aaKnown RBP15.58■□□□□ 0.08
SHMT2-208ENST00000553868 LUC7L2Q9Y383 392 aaKnown RBP15.58■□□□□ 0.08
SHMT2-208ENST00000553868 SQORQ9Y6N5 450 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 DENND4AQ7Z401 1863 aa15.58■□□□□ 0.08
SHMT2-208ENST00000553868 SPEGQ15772 3267 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 TULP1O00294 542 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-208ENST00000553868 GPR182O15218 404 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 MFAP3LO75121 409 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 CLASP2O75122 1294 aaKnown RBP15.57■□□□□ 0.08
SHMT2-208ENST00000553868 RPS6KA5O75582 802 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 GYPCP04921 128 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 DLATP10515 647 aaKnown RBP15.57■□□□□ 0.08
SHMT2-208ENST00000553868 TNNI1P19237 187 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 CLDN10P78369 228 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 PPM1JQ5JR12 505 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 KRT39Q6A163 491 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 CRELD2Q6UXH1 353 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-208ENST00000553868 FAM43BQ6ZT52 329 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-208ENST00000553868 CACNA2D4Q7Z3S7 1137 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 TMC7Q7Z402 723 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 C1orf210Q8IVY1 113 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 MAML2Q8IZL2 1156 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-208ENST00000553868 ZSWIM2Q8NEG5 633 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 CPLX3Q8WVH0 158 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 RSAD2Q8WXG1 361 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 PANX2Q96RD6 677 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 CGRRF1Q99675 332 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 CCDC94Q9BW85 323 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-208ENST00000553868 FTHL17Q9BXU8 183 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 TRIM6Q9C030 488 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-208ENST00000553868 NUCKS1Q9H1E3 243 aaKnown RBP15.57■□□□□ 0.08
SHMT2-208ENST00000553868 CWH43Q9H720 699 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 TBC1D17Q9HA65 648 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 FAM207AQ9NSI2 230 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-208ENST00000553868 GCNT4Q9P109 453 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 CAPN11Q9UMQ6 739 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 PIN4Q9Y237 131 aaKnown RBP15.57■□□□□ 0.08
SHMT2-208ENST00000553868 USTQ9Y2C2 406 aa15.57■□□□□ 0.08
SHMT2-208ENST00000553868 LRRIQ3A6PVS8 624 aaPredicted RBP15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms