RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ZMAT4Q9H898 229 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 SLC6A20Q9NP91 592 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 KLHL11Q9NVR0 708 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.49□□□□□ -1.69
LIMA1-208ENST00000551691 PNMA2Q9UL42 364 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 B3GALT1Q9Y5Z6 326 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 UBR2Q8IWV8 1755 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 ZNF646O15015 1829 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-208ENST00000551691 KIF20BQ96Q89 1820 aa4.49□□□□□ -1.69
LIMA1-208ENST00000551691 SSC5DA1L4H1 1573 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 MAP3K15Q6ZN16 1313 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 UBA6A0AVT1 1052 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 CLRN2A0PK11 232 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 LCHNA4D1U4 455 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 ERVV-1B6SEH8 477 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 F8W031 263 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 TBX3O15119 743 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 ZBED1O96006 694 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 AMY2AP04746 511 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 SNRPA1P09661 255 aaKnown RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 PFKLP17858 780 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 AMY2BP19961 511 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 FNTBP49356 437 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 MRPS5P82675 430 aaKnown RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 PRR5P85299 388 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 FOXO4P98177 505 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 NHLH1Q02575 133 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 TFF2Q03403 129 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 BTKQ06187 659 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 LMOD3Q0VAK6 560 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 SPIDRQ14159 915 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 PUM1Q14671 1186 aaKnown RBP eCLIP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 PDCD1Q15116 288 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 EPHA7Q15375 998 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 PDCD2Q16342 344 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 LRRC26Q2I0M4 334 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 ANO4Q32M45 955 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 PGS1Q32NB8 556 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 VWA3BQ502W6 1294 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 ERICH6BQ5W0A0 696 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 PPP1R42Q7Z4L9 355 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 DAAM2Q86T65 1068 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 CXorf67Q86X51 503 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 NOSTRINQ8IVI9 506 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 TRIM48Q8IWZ4 208 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 FAM156AQ8NDB6 213 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 UHMK1Q8TAS1 419 aaKnown RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 FNIP1Q8TF40 1166 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 ATXN2LQ8WWM7 1075 aaKnown RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 EAF2Q96CJ1 260 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 EVI5LQ96CN4 794 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 C1GALT1C1Q96EU7 318 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 MVB12AQ96EY5 273 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 SLC39A13Q96H72 371 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 SLC2A13Q96QE2 648 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 HERPUD2Q9BSE4 406 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 THUMPD2Q9BTF0 503 aaKnown RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 UTP14AQ9BVJ6 771 aaKnown RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 GTPBP4Q9BZE4 634 aaKnown RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 TMPRSS5Q9H3S3 457 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 POFUT1Q9H488 388 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 C11orf49Q9H6J7 331 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 ARFGAP3Q9NP61 516 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 DBR1Q9UK59 544 aaKnown RBP4.48□□□□□ -1.69
LIMA1-208ENST00000551691 LRCH1Q9Y2L9 728 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 PCDHGB6Q9Y5F9 930 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 PMF1-BGLAPU3KQ54 211 aa4.48□□□□□ -1.69
LIMA1-208ENST00000551691 PFASO15067 1338 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 CHD9Q3L8U1 2897 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 SMIM22K7EJ46 135 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 DVL2O14641 736 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 HGSO14964 777 aaPredicted RBP4.47□□□□□ -1.69
LIMA1-208ENST00000551691 SLC27A2O14975 620 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 UFL1O94874 794 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 ZRANB2O95218 330 aaKnown RBP eCLIP4.47□□□□□ -1.69
LIMA1-208ENST00000551691 RPLP2P05387 115 aaKnown RBP4.47□□□□□ -1.69
LIMA1-208ENST00000551691 LPLP06858 475 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 POU2F2P09086 479 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 PTPN1P18031 435 aaKnown RBP4.47□□□□□ -1.69
LIMA1-208ENST00000551691 CD53P19397 219 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 C5AR1P21730 350 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 HOXD10P28358 340 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 FLT3LGP49771 235 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 KCNQ1P51787 676 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 PRMT2P55345 433 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 MRPS9P82933 396 aaKnown RBP4.47□□□□□ -1.69
LIMA1-208ENST00000551691 CDK17Q00537 523 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 DCTN1Q14203 1278 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 PAN2Q504Q3 1202 aaKnown RBP4.47□□□□□ -1.69
LIMA1-208ENST00000551691 TTC38Q5R3I4 469 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 ATAT1Q5SQI0 421 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 FAM83BQ5T0W9 1011 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 UBXN11Q5T124 520 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 MBNL2Q5VZF2 373 aaKnown RBP4.47□□□□□ -1.69
LIMA1-208ENST00000551691 ESRP1Q6NXG1 681 aaKnown RBP4.47□□□□□ -1.69
LIMA1-208ENST00000551691 TOGARAM2Q6ZUX3 1019 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 DCP2Q8IU60 420 aaKnown RBP4.47□□□□□ -1.69
LIMA1-208ENST00000551691 RIOX2Q8IUF8 465 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms