RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 RFPL2O75678 378 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 C22orf31O95567 290 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 CNPP09543 421 aaKnown RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 MAPTP10636 758 aaKnown RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 BMP2P12643 396 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 SCP2P22307 547 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 YWHABP31946 246 aaKnown RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 MTIF2P46199 727 aaKnown RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 CLCN4P51793 760 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 SMTNP53814 917 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 POLGP54098 1239 aaPredicted RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 FAM189BP81408 668 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 FKBP3Q00688 224 aaKnown RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 STK4Q13043 487 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 ITGB3BPQ13352 177 aaPredicted RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 TRIM14Q14142 442 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 GIT2Q14161 759 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 KCNJ12Q14500 433 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 FKBP15Q5T1M5 1219 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 C6orf118Q5T5N4 469 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 DESI1Q6ICB0 168 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 CENPPQ6IPU0 288 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 RINT1Q6NUQ1 792 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 C15orf39Q6ZRI6 1047 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 PLPPR4Q7Z2D5 763 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 TMC6Q7Z403 805 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 DDX53Q86TM3 631 aaKnown RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 MYCT1Q8N699 235 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 CCDC112Q8NEF3 446 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 NETO1Q8TDF5 533 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 PIGOQ8TEQ8 1089 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 SMG7Q92540 1137 aaKnown RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 LPPQ93052 612 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 IQCDQ96DY2 449 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 IGSF21Q96ID5 467 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 FAM167AQ96KS9 214 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 CEP63Q96MT8 703 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 MAP7D2Q96T17 732 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 VN1R3Q9BXE9 311 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 SRRTQ9BXP5 876 aaKnown RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 EPC1Q9H2F5 836 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 PIDD1Q9HB75 910 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 WDR6Q9NNW5 1121 aaKnown RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 OLFML3Q9NRN5 406 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 SAMSN1Q9NSI8 373 aaKnown RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 NRBP2Q9NSY0 501 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 EPS15L1Q9UBC2 864 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 LIMA1Q9UHB6 759 aaKnown RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 RAB23Q9ULC3 237 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 MAPK8IP1Q9UQF2 711 aa7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 DNMT3AQ9Y6K1 912 aaPredicted RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 CNOT1A5YKK6 2376 aaKnown RBP7.72□□□□□ -1.17
DEPDC4-208ENST00000549341 CCDC195A0A1B0GUA6 201 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 ESPNB1AK53 854 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 PES1O00541 588 aaKnown RBP7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 HBP1O60381 514 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 GPR32O75388 356 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 GCNT3O95395 438 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 GLUD1P00367 558 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 URODP06132 367 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 CD72P21854 359 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 SFPQP23246 707 aaKnown RBP eCLIP7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 SLC11A1P49279 550 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 SNRPFP62306 86 aaKnown RBP7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 PPP2R3AQ06190 1150 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 HTR4Q13639 388 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 EDRF1Q3B7T1 1238 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 ZNF528Q3MIS6 628 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 XKR9Q5GH70 373 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 XKR3Q5GH77 459 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 TCP11X2Q5H9J9 407 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 CDKAL1Q5VV42 579 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 SPECC1LQ69YQ0 1117 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 TTI2Q6NXR4 508 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 ELMSAN1Q6PJG2 1045 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 GLB1LQ6UWU2 654 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 PRR23BQ6ZRT6 265 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 C1orf186Q6ZWK4 172 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 HS2ST1Q7LGA3 356 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 CCDC186Q7Z3E2 898 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 FILIP1Q7Z7B0 1213 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 CCDC60Q8IWA6 550 aaPredicted RBP7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 LRRC71Q8N4P6 559 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 KIAA0895Q8NCT3 520 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 MCPH1Q8NEM0 835 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 LRRC15Q8TF66 581 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 KIFAP3Q92845 792 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 SHDQ96IW2 340 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 IFT74Q96LB3 600 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 KLHL5Q96PQ7 755 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 JPH2Q9BR39 696 aaPredicted RBP7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 REEP2Q9BRK0 252 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 TMEM206Q9H813 350 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 C17orf75Q9HAS0 396 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 ZNF302Q9NR11 478 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 ZSCAN32Q9NX65 697 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 CGNQ9P2M7 1197 aaKnown RBP7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 GABBR1Q9UBS5 961 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 DNAJB4Q9UDY4 337 aa7.71□□□□□ -1.18
DEPDC4-208ENST00000549341 FBXO4Q9UKT5 387 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms