RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 NEMP1O14524 444 aa20.21■□□□□ 0.83
HDAC4-215ENST00000543185 BCL10O95999 233 aa20.21■□□□□ 0.83
HDAC4-215ENST00000543185 MAPK1P28482 360 aa20.21■□□□□ 0.83
HDAC4-215ENST00000543185 ADORA1P30542 326 aa20.21■□□□□ 0.83
HDAC4-215ENST00000543185 NAB2Q15742 525 aa20.21■□□□□ 0.83
HDAC4-215ENST00000543185 DSTYKQ6XUX3 929 aa20.21■□□□□ 0.83
HDAC4-215ENST00000543185 AGPAT1Q99943 283 aa20.21■□□□□ 0.83
HDAC4-215ENST00000543185 EFCAB1Q9HAE3 211 aa20.21■□□□□ 0.83
HDAC4-215ENST00000543185 EIF2B2P49770 351 aaKnown RBP20.21■□□□□ 0.83
HDAC4-215ENST00000543185 CACNB1Q02641 598 aaPredicted RBP20.21■□□□□ 0.83
HDAC4-215ENST00000543185 SFSWAPQ12872 951 aaKnown RBP20.21■□□□□ 0.83
HDAC4-215ENST00000543185 MTERF2Q49AM1 385 aa20.21■□□□□ 0.83
HDAC4-215ENST00000543185 MMRN1Q13201 1228 aa20.21■□□□□ 0.83
HDAC4-215ENST00000543185 SPICE1Q8N0Z3 855 aa20.21■□□□□ 0.83
HDAC4-215ENST00000543185 RBBP8NLQ8NC74 664 aaPredicted RBP20.21■□□□□ 0.83
HDAC4-215ENST00000543185 RINLQ6ZS11 566 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 RNF25Q96BH1 459 aaPredicted RBP20.2■□□□□ 0.82
HDAC4-215ENST00000543185 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.2■□□□□ 0.82
HDAC4-215ENST00000543185 HECW2Q9P2P5 1572 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 NINQ8N4C6 2090 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 TTKP33981 857 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 CDC42EP1Q00587 391 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 C16orf72Q14CZ0 275 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 GPD1LQ8N335 351 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 URGCPQ8TCY9 931 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 C1orf54Q8WWF1 131 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 TNIP3Q96KP6 325 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 EFNA5P52803 228 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 SLC35G2Q8TBE7 412 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 IL6STP40189 918 aaPredicted RBP20.2■□□□□ 0.82
HDAC4-215ENST00000543185 PDK1Q15118 436 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 CCNJLQ8IV13 435 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 NAT9Q9BTE0 207 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 TASP1Q9H6P5 420 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 BARHL2Q9NY43 387 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 NCKAP5LQ9HCH0 1330 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 KLHL41O60662 606 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 MCRS1Q96EZ8 462 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 FBXO40Q9UH90 709 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 DFFAO00273 331 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 MTRF1O75570 445 aaKnown RBP20.2■□□□□ 0.82
HDAC4-215ENST00000543185 PDIA5Q14554 519 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 LONRF1Q17RB8 773 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 TAS2R42Q7RTR8 314 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 SMARCAD1Q9H4L7 1026 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 TUFT1Q9NNX1 390 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 RGL1Q9NZL6 768 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 SLCO1B7G3V0H7 640 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 EDRF1Q3B7T1 1238 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 CCDC144BQ3MJ40 725 aa20.2■□□□□ 0.82
HDAC4-215ENST00000543185 ATP10AO60312 1499 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 THRAP10827 490 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 NEK10Q6ZWH5 1172 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 PCMTD2Q9NV79 361 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 RNF17Q9BXT8 1623 aaKnown RBP20.19■□□□□ 0.82
HDAC4-215ENST00000543185 NCK2O43639 380 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 THEMIS2Q5TEJ8 643 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 PPIL6Q8IXY8 311 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 INTS2Q9H0H0 1204 aaKnown RBP20.19■□□□□ 0.82
HDAC4-215ENST00000543185 TRIM49BA6NDI0 452 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 R3HDM1Q15032 1099 aaKnown RBP20.19■□□□□ 0.82
HDAC4-215ENST00000543185 SLC27A3Q5K4L6 730 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 C3orf62Q6ZUJ4 267 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 E2F7Q96AV8 911 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 DHX35Q9H5Z1 703 aaKnown RBP20.19■□□□□ 0.82
HDAC4-215ENST00000543185 TJP2Q9UDY2 1190 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 UBA6A0AVT1 1052 aaPredicted RBP20.19■□□□□ 0.82
HDAC4-215ENST00000543185 BIRC5O15392 142 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 C18orf8Q96DM3 657 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 BDH2Q9BUT1 245 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 ABCB1P08183 1280 aaPredicted RBP20.19■□□□□ 0.82
HDAC4-215ENST00000543185 NUDT2P50583 147 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 TARSP26639 723 aaKnown RBP20.19■□□□□ 0.82
HDAC4-215ENST00000543185 ZNF544Q6NX49 715 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 SPRTNQ9H040 489 aaPredicted RBP20.19■□□□□ 0.82
HDAC4-215ENST00000543185 TBX22Q9Y458 520 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 STON1Q9Y6Q2 735 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 A0A087WWV3 80 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 PIK3R1P27986 724 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 TRIM25Q14258 630 aaKnown RBP20.19■□□□□ 0.82
HDAC4-215ENST00000543185 TSNQ15631 228 aaKnown RBP20.19■□□□□ 0.82
HDAC4-215ENST00000543185 KRT74Q7RTS7 529 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 SVOPQ8N4V2 548 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 PIGUQ9H490 435 aa20.19■□□□□ 0.82
HDAC4-215ENST00000543185 EIF2B5Q13144 721 aaKnown RBP20.18■□□□□ 0.82
HDAC4-215ENST00000543185 LRRC24Q50LG9 513 aa20.18■□□□□ 0.82
HDAC4-215ENST00000543185 DPP10Q8N608 796 aa20.18■□□□□ 0.82
HDAC4-215ENST00000543185 SREK1IP1Q8N9Q2 155 aaPredicted RBP20.18■□□□□ 0.82
HDAC4-215ENST00000543185 SPATA18Q8TC71 538 aa20.18■□□□□ 0.82
HDAC4-215ENST00000543185 PABPC3Q9H361 631 aaKnown RBP20.18■□□□□ 0.82
HDAC4-215ENST00000543185 GOLPH3Q9H4A6 298 aa20.18■□□□□ 0.82
HDAC4-215ENST00000543185 SERHL2Q9H4I8 314 aa20.18■□□□□ 0.82
HDAC4-215ENST00000543185 SERHLQ9NQF3 203 aa20.18■□□□□ 0.82
HDAC4-215ENST00000543185 SPATA16Q9BXB7 569 aa20.18■□□□□ 0.82
HDAC4-215ENST00000543185 CYP2D7A0A087X1C5 515 aa20.18■□□□□ 0.82
HDAC4-215ENST00000543185 MLNP12872 115 aa20.18■□□□□ 0.82
HDAC4-215ENST00000543185 CHRNB3Q05901 458 aa20.18■□□□□ 0.82
HDAC4-215ENST00000543185 DPY19L2Q6NUT2 758 aa20.18■□□□□ 0.82
HDAC4-215ENST00000543185 USP38Q8NB14 1042 aa20.18■□□□□ 0.82
HDAC4-215ENST00000543185 AGR3Q8TD06 166 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms