RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ANK1P16157 1881 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 MTMR11A4FU01 709 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 ARNTLO00327 626 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 LILRB5O75023 590 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 PAX3P23760 479 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 GDI1P31150 447 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 ABCD1P33897 745 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 VIPR2P41587 438 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 EPHB3P54753 998 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 LILRA4P59901 499 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 GTF2BQ00403 316 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 GRIN1Q05586 938 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 DUSP4Q13115 394 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 MCM6Q14566 821 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 KARSQ15046 597 aaKnown RBP12.32□□□□□ -0.44
VPS28-214ENST00000531032 TEAD2Q15562 447 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 OVOS1Q6IE37 1185 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 JADE1Q6IE81 842 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 CENPPQ6IPU0 288 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 DSTYKQ6XUX3 929 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 MAMSTRQ6ZN01 415 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 BRAPQ7Z569 592 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 MFSD6LQ8IWD5 586 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 KIAA2013Q8IYS2 634 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 ATRIPQ8WXE1 791 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 RAD54LQ92698 747 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 RMDN1Q96DB5 314 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 HINFPQ9BQA5 517 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 IER2Q9BTL4 223 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 MSTO1Q9BUK6 570 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 CHRDQ9H2X0 955 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 ZSCAN32Q9NX65 697 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 HSFX1Q9UBD0 423 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 DERAQ9Y315 318 aa12.32□□□□□ -0.44
VPS28-214ENST00000531032 A0A1W2PRU2 124 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 ANO9A1A5B4 782 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 HEPACAM2A8MVW5 462 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 PIRO00625 290 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 TBCAO75347 108 aaKnown RBP12.31□□□□□ -0.44
VPS28-214ENST00000531032 NFICP08651 508 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 ODC1P11926 461 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 MTAPQ13126 283 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 DHX8Q14562 1220 aaKnown RBP12.31□□□□□ -0.44
VPS28-214ENST00000531032 C9orf57Q5W0N0 161 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 LARP1BQ659C4 914 aaKnown RBP12.31□□□□□ -0.44
VPS28-214ENST00000531032 DCLK2Q8N568 766 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 ATAD1Q8NBU5 361 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 FAM3CQ92520 227 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 LARP4BQ92615 738 aaKnown RBP12.31□□□□□ -0.44
VPS28-214ENST00000531032 E2F7Q96AV8 911 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 SENP8Q96LD8 212 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 FAM126AQ9BYI3 521 aaPredicted RBP12.31□□□□□ -0.44
VPS28-214ENST00000531032 EPC1Q9H2F5 836 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 ST6GALNAC4Q9H4F1 302 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 SLITRK6Q9H5Y7 841 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 NDRG2Q9UN36 371 aaKnown RBP12.31□□□□□ -0.44
VPS28-214ENST00000531032 ASB3Q9Y575 518 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.31□□□□□ -0.44
VPS28-214ENST00000531032 STYXL1Q9Y6J8 313 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 PIAS3Q9Y6X2 628 aa12.31□□□□□ -0.44
VPS28-214ENST00000531032 NUP210Q8TEM1 1887 aaPredicted RBP12.31□□□□□ -0.44
VPS28-214ENST00000531032 CEP250Q9BV73 2442 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 ANKRD63C9JTQ0 380 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 ZNF263O14978 683 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 CYP11A1P05108 521 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 KRT18P05783 430 aaKnown RBP12.3□□□□□ -0.44
VPS28-214ENST00000531032 TDGF1P13385 188 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 NMT1P30419 496 aaKnown RBP12.3□□□□□ -0.44
VPS28-214ENST00000531032 ALDH1A3P47895 512 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 MLLT6P55198 1093 aaPredicted RBP12.3□□□□□ -0.44
VPS28-214ENST00000531032 POU5F1Q01860 360 aaKnown RBP12.3□□□□□ -0.44
VPS28-214ENST00000531032 FCHO2Q0JRZ9 810 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 TMEM132DQ14C87 1099 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 SF3A1Q15459 793 aaKnown RBP12.3□□□□□ -0.44
VPS28-214ENST00000531032 ARMCX5Q6P1M9 558 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 TSSK4Q6SA08 328 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 GAREM2Q75VX8 874 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 TTC9BQ8N6N2 239 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 OR10T2Q8NGX3 314 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 RASSF8Q8NHQ8 419 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 PSMG2Q969U7 264 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 RSPRY1Q96DX4 576 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 FAM212AQ96EL1 285 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 MSANTD3Q96H12 275 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 TMEM209Q96SK2 561 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 MKNK1Q9BUB5 465 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 CCSER1Q9C0I3 900 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 ZHX3Q9H4I2 956 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 ASB7Q9H672 318 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 SLC27A5Q9Y2P5 690 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 C2CD2Q9Y426 696 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 SCN1AP35498 2009 aa12.3□□□□□ -0.44
VPS28-214ENST00000531032 TISP43B9A030 160 aa12.29□□□□□ -0.44
VPS28-214ENST00000531032 CHADO15335 359 aa12.29□□□□□ -0.44
VPS28-214ENST00000531032 FGF19O95750 216 aa12.29□□□□□ -0.44
VPS28-214ENST00000531032 CHRNB1P11230 501 aa12.29□□□□□ -0.44
VPS28-214ENST00000531032 DDIT3P35638 169 aa12.29□□□□□ -0.44
VPS28-214ENST00000531032 ACOT2P49753 483 aa12.29□□□□□ -0.44
VPS28-214ENST00000531032 PUM1Q14671 1186 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS28-214ENST00000531032 ZC2HC1CQ53FD0 456 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms