RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 RAB27AP51159 221 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 ZNF135P52742 658 aaPredicted RBP5.22□□□□□ -1.57
CD44-217ENST00000525348 POU6F2P78424 691 aaPredicted RBP5.22□□□□□ -1.57
CD44-217ENST00000525348 ZNF844Q08AG5 666 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 DYRK1AQ13627 763 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 PRR16Q569H4 304 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 CLNKQ7Z7G1 428 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 PDSS2Q86YH6 399 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 COLGALT2Q8IYK4 626 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 LPIN2Q92539 896 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 SCAMP4Q969E2 229 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 NUP88Q99567 741 aaPredicted RBP5.22□□□□□ -1.57
CD44-217ENST00000525348 MRPL46Q9H2W6 279 aaKnown RBP5.22□□□□□ -1.57
CD44-217ENST00000525348 BRD9Q9H8M2 597 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 GPR35Q9HC97 309 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 LMBRD1Q9NUN5 540 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 FOXJ2Q9P0K8 574 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 ANKRD6Q9Y2G4 727 aa5.22□□□□□ -1.57
CD44-217ENST00000525348 ARHGEF17Q96PE2 2063 aaPredicted RBP5.22□□□□□ -1.57
CD44-217ENST00000525348 NUDT3O95989 172 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 ALDH2P05091 517 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 FTH1P19P0C7X4 201 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 TYRP14679 529 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 TOB1P50616 345 aaPredicted RBP5.21□□□□□ -1.58
CD44-217ENST00000525348 HNRNPMP52272 730 aaKnown RBP eCLIP5.21□□□□□ -1.58
CD44-217ENST00000525348 NKX6-1P78426 367 aaPredicted RBP5.21□□□□□ -1.58
CD44-217ENST00000525348 SIM1P81133 766 aaPredicted RBP5.21□□□□□ -1.58
CD44-217ENST00000525348 KIF22Q14807 665 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 ZNF169Q14929 603 aaPredicted RBP5.21□□□□□ -1.58
CD44-217ENST00000525348 ATAT1Q5SQI0 421 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 DNAJC10Q8IXB1 793 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 SH2D3CQ8N5H7 860 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 CELF5Q8N6W0 485 aaKnown RBP5.21□□□□□ -1.58
CD44-217ENST00000525348 SIMC1Q8NDZ2 872 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 SLC30A5Q8TAD4 765 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 POC1BQ8TC44 478 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 TRIB1Q96RU8 372 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 SMOC2Q9H3U7 446 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 WDCPQ9H6R7 721 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 RLIMQ9NVW2 624 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 ZNHIT2Q9UHR6 403 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 PCDHA1Q9Y5I3 950 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 NR2E3Q9Y5X4 410 aa5.21□□□□□ -1.58
CD44-217ENST00000525348 TOR1BO14657 336 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 ARIH2O95376 493 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 SRGNP10124 158 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 RARBP10826 455 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 CXCR5P32302 372 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 RPS7P62081 194 aaKnown RBP5.2□□□□□ -1.58
CD44-217ENST00000525348 FPGSQ05932 587 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 PIGFQ07326 219 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 HABP2Q14520 560 aaPredicted RBP5.2□□□□□ -1.58
CD44-217ENST00000525348 PLS1Q14651 629 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 THEMIS2Q5TEJ8 643 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 KIAA0895LQ68EN5 471 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 VWA1Q6PCB0 445 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 SLC30A10Q6XR72 485 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 TSHZ1Q6ZSZ6 1077 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 TPH2Q8IWU9 490 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 GRAMD1CQ8IYS0 662 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 AOPEPQ8N6M6 819 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 FAM98AQ8NCA5 519 aaKnown RBP5.2□□□□□ -1.58
CD44-217ENST00000525348 PLBD2Q8NHP8 589 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 JPH3Q8WXH2 748 aaPredicted RBP5.2□□□□□ -1.58
CD44-217ENST00000525348 TNPO1Q92973 898 aaKnown RBP5.2□□□□□ -1.58
CD44-217ENST00000525348 PDLIM2Q96JY6 352 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 R3HDMLQ9H3Y0 253 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 INTS13Q9NVM9 706 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 CFAP97Q9P2B7 532 aa5.2□□□□□ -1.58
CD44-217ENST00000525348 FEZ2Q9UHY8 353 aaPredicted RBP5.2□□□□□ -1.58
CD44-217ENST00000525348 ZAR1LA6NP61 321 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 POLRMTO00411 1230 aaKnown RBP5.19□□□□□ -1.58
CD44-217ENST00000525348 KIF20AO95235 890 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 GNAI3P08754 354 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 CHRM3P20309 590 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 GNAI1P63096 354 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 MRPS35P82673 323 aaKnown RBP5.19□□□□□ -1.58
CD44-217ENST00000525348 EXOSC9Q06265 439 aaKnown RBP5.19□□□□□ -1.58
CD44-217ENST00000525348 TCF15Q12870 199 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 BOP1Q14137 746 aaKnown RBP5.19□□□□□ -1.58
CD44-217ENST00000525348 ZNF362Q5T0B9 420 aaPredicted RBP5.19□□□□□ -1.58
CD44-217ENST00000525348 IFIT1BQ5T764 474 aaKnown RBP5.19□□□□□ -1.58
CD44-217ENST00000525348 TAF2Q6P1X5 1199 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 B3GNT9Q6UX72 402 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 PPP1R32Q7Z5V6 425 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 PRIMA1Q86XR5 153 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 ACTRT2Q8TDY3 377 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 DIS3LQ8TF46 1054 aaKnown RBP5.19□□□□□ -1.58
CD44-217ENST00000525348 BBC3Q96PG8 261 aaPredicted RBP5.19□□□□□ -1.58
CD44-217ENST00000525348 MAP3K14Q99558 947 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 CGRRF1Q99675 332 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 SMOQ99835 787 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 TINAGL1Q9GZM7 467 aaPredicted RBP5.19□□□□□ -1.58
CD44-217ENST00000525348 CDH19Q9H159 772 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 RIOX1Q9H6W3 641 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 GNL3LQ9NVN8 582 aaKnown RBP5.19□□□□□ -1.58
CD44-217ENST00000525348 PNPOQ9NVS9 261 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 ZNF180Q9UJW8 692 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 NEU2Q9Y3R4 380 aa5.19□□□□□ -1.58
CD44-217ENST00000525348 E7ENX8 843 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms