RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	VHLL	Q6RSH7	139 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	LMBR1L	Q6UX01	489 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	SEZ6L2	Q6UXD5	910 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	SPNS3	Q6ZMD2	512 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	GLRX5	Q86SX6	157 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	DDX53	Q86TM3	631 aa	Known RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	PRIMA1	Q86XR5	153 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	DZIP1	Q86YF9	867 aa	Known RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	HID1	Q8IV36	788 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	MAPKAPK5	Q8IW41	473 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	HDDC3	Q8N4P3	179 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	CMAS	Q8NFW8	434 aa	Predicted RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	NEDD1	Q8NHV4	660 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	BAHD1	Q8TBE0	780 aa	Predicted RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	ZNF507	Q8TCN5	953 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	FGF11	Q92914	225 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	ZNF669	Q96BR6	464 aa	Predicted RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	ZNF707	Q96C28	371 aa	Predicted RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	NAF1	Q96HR8	494 aa	Known RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	DPH2	Q9BQC3	489 aa	Predicted RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	PI4K2A	Q9BTU6	479 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	PLA2G2F	Q9BZM2	168 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	MRPL18	Q9H0U6	180 aa	Known RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	ADAMTS10	Q9H324	1103 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	RAD18	Q9NS91	495 aa		4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	POLR3B	Q9NW08	1133 aa	Predicted RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	SAP30BP	Q9UHR5	308 aa	Known RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	MAP1A	P78559	2803 aa	Predicted RBP	4.74	□□□□□ -1.65
UBR4-215	ENST00000492606	NSD1	Q96L73	2696 aa	Predicted RBP	4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	CCDC195	A0A1B0GUA6	201 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	HAS3	O00219	553 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	GNB5	O14775	395 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	SHOX	O15266	292 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	CBFA2T3	O75081	653 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	RFPL2	O75678	378 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	AGFG2	O95081	481 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	CST3	P01034	146 aa	Predicted RBP	4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	FAM153B	P0C7A2	387 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	MYB	P10242	640 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	GHR	P10912	638 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	CCNF	P41002	786 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	PREP	P48147	710 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	EPHA5	P54756	1037 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	MECOM	Q03112	1051 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	SKIDA1	Q1XH10	827 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	SLC10A6	Q3KNW5	377 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	TKFC	Q3LXA3	575 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	LRRC24	Q50LG9	513 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	C2orf27A	Q580R0	203 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	PRAMEF13	Q5VWM6	474 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	FOXB2	Q5VYV0	432 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	DIEXF	Q68CQ4	756 aa	Known RBP	4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	MAMDC2	Q7Z304	686 aa	Predicted RBP	4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	ERICH1	Q86X53	443 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	CLEC10A	Q8IUN9	316 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	CPXCR1	Q8N123	301 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	SVOP	Q8N4V2	548 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	SPATA5	Q8NB90	893 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	FAM13C	Q8NE31	585 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	DNAJB8	Q8NHS0	232 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	RIN3	Q8TB24	985 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	MORC4	Q8TE76	937 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	SSC4D	Q8WTU2	575 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	FAM3C	Q92520	227 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	PIGK	Q92643	395 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	NXPE2	Q96DL1	559 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	TMEM176A	Q96HP8	235 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	ATXN3L	Q9H3M9	355 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	ACSS3	Q9H6R3	686 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	CYP4F12	Q9HCS2	524 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	TMEM74B	Q9NUR3	256 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	FANCL	Q9NW38	375 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	PFDN2	Q9UHV9	154 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	PLAA	Q9Y263	795 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	FOCAD	Q5VW36	1801 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	MYLK	Q15746	1914 aa		4.73	□□□□□ -1.65
UBR4-215	ENST00000492606	NRCAM	Q92823	1304 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	LRRK1	Q38SD2	2015 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	CCDC163	A0A0D9SF12	145 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	PI4KAP2	A4QPH2	592 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	TBKBP1	A7MCY6	615 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	MAN2B1	O00754	1011 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	CBFA2T2	O43439	604 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	SUSD5	O60279	629 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	OPHN1	O60890	802 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	PDE8B	O95263	885 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	ARIH2	O95376	493 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	CHRNA1	P02708	482 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	IBSP	P21815	317 aa	Predicted RBP	4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	PMS1	P54277	932 aa	Known RBP	4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	OXCT1	P55809	520 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	RAC1	P63000	192 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	LPIN1	Q14693	890 aa		4.72	□□□□□ -1.65
UBR4-215	ENST00000492606	SMAD1	Q15797	465 aa	Known RBP	4.72	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms