RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 LCA5LO95447 670 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 POMCP01189 267 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 ALDH2P05091 517 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 CYP11A1P05108 521 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 WARSP23381 471 aaKnown RBP10.86□□□□□ -0.67
USP39-215ENST00000481409 CLCNKBP51801 687 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 ZNF132P52740 706 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 WDR5P61964 334 aaKnown RBP10.86□□□□□ -0.67
USP39-215ENST00000481409 SPA17Q15506 151 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 SLC18A3Q16572 532 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 TDRD12Q587J7 1177 aaKnown RBP10.86□□□□□ -0.67
USP39-215ENST00000481409 SPOPLQ6IQ16 392 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 ZSCAN30Q86W11 494 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 C7orf61Q8IZ16 206 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 HERVK_113Q902F9 699 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 BADQ92934 168 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 ZNF689Q96CS4 500 aaPredicted RBP10.86□□□□□ -0.67
USP39-215ENST00000481409 MMS19Q96T76 1030 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 EIF3CQ99613 913 aaKnown RBP10.86□□□□□ -0.67
USP39-215ENST00000481409 KCNF1Q9H3M0 494 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 ARHGAP20Q9P2F6 1191 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 NXF1Q9UBU9 619 aaKnown RBP10.86□□□□□ -0.67
USP39-215ENST00000481409 INPP5FQ9Y2H2 1132 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 PCDHB4Q9Y5E5 795 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 SNX9Q9Y5X1 595 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 EPN1Q9Y6I3 576 aaPredicted RBP10.86□□□□□ -0.67
USP39-215ENST00000481409 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.86□□□□□ -0.67
USP39-215ENST00000481409 FNDC1Q4ZHG4 1894 aaPredicted RBP10.86□□□□□ -0.67
USP39-215ENST00000481409 BRCA2P51587 3418 aa10.86□□□□□ -0.67
USP39-215ENST00000481409 COL4A6Q14031 1691 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 TBKBP1A7MCY6 615 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 AKR1B10O60218 316 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 LRRN2O75325 713 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 B3GAT3O94766 335 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 NDUFA10O95299 355 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 CCDC175P0C221 793 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 FGFR1P11362 822 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 ODC1P11926 461 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 GZMAP12544 262 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 KRT5P13647 590 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 TYMPP19971 482 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 CLCN1P35523 988 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 USP8P40818 1118 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 GUCY2FP51841 1108 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 CDR2Q01850 454 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 APBA1Q02410 837 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 TCTN1Q2MV58 587 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 ASTE1Q2TB18 679 aaPredicted RBP10.85□□□□□ -0.67
USP39-215ENST00000481409 COL13A1Q5TAT6 717 aaPredicted RBP10.85□□□□□ -0.67
USP39-215ENST00000481409 TMEM270Q6UE05 265 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 DSTYKQ6XUX3 929 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 ZNF662Q6ZS27 426 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 METTL23Q86XA0 190 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 RBBP8NLQ8NC74 664 aaPredicted RBP10.85□□□□□ -0.67
USP39-215ENST00000481409 EPS8L1Q8TE68 723 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 DPF3Q92784 378 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 KAT5Q92993 513 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 TMEM176AQ96HP8 235 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 TNIP3Q96KP6 325 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 SUSD3Q96L08 255 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 CALR3Q96L12 384 aaKnown RBP10.85□□□□□ -0.67
USP39-215ENST00000481409 NT5C1AQ9BXI3 368 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 ZNF518BQ9C0D4 1074 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 CXCL16Q9H2A7 254 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 HAUS4Q9H6D7 363 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 AAASQ9NRG9 546 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 AJAP1Q9UKB5 411 aaPredicted RBP10.85□□□□□ -0.67
USP39-215ENST00000481409 INTUQ9ULD6 942 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 SCN1AP35498 2009 aa10.85□□□□□ -0.67
USP39-215ENST00000481409 CASTOR2A6NHX0 329 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 CYB561D2O14569 222 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 GABRDO14764 452 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 SYN3O14994 580 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 CYP26A1O43174 497 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 GABBR2O75899 941 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 DDHD2O94830 711 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 LSM8O95777 96 aaKnown RBP10.84□□□□□ -0.67
USP39-215ENST00000481409 TUBB4AP04350 444 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 VDRP11473 427 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 CYP11B1P15538 503 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 LAG3P18627 525 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 TNFAIP3P21580 790 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 MSNP26038 577 aaKnown RBP10.84□□□□□ -0.67
USP39-215ENST00000481409 PCSK1P29120 753 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 GNA15P30679 374 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 EIF4A3P38919 411 aaKnown RBP10.84□□□□□ -0.67
USP39-215ENST00000481409 ALDH7A1P49419 539 aaKnown RBP10.84□□□□□ -0.67
USP39-215ENST00000481409 AFF1P51825 1210 aaKnown RBP10.84□□□□□ -0.67
USP39-215ENST00000481409 KIF11P52732 1056 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 HTRA4P83105 476 aaPredicted RBP10.84□□□□□ -0.67
USP39-215ENST00000481409 GOLGA8FQ08AF8 430 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 GOLGA8DPQ0D2H9 430 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 SOWAHAQ2M3V2 549 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 TMEM240Q5SV17 173 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.84□□□□□ -0.67
USP39-215ENST00000481409 ZNF365Q70YC5 407 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 GPR65Q8IYL9 337 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 CRYBG2Q8N1P7 616 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 KIAA1524Q8TCG1 905 aa10.84□□□□□ -0.67
USP39-215ENST00000481409 SENP8Q96LD8 212 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms