RNA–Protein interactions for RNA: ENST00000478050.1

SF3B6-202, Transcript of splicing factor 3b subunit 6, humanhuman

TSL 2

Gene SF3B6, Length 720 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-202ENST00000478050 TNIP1Q15025 636 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 ENOX2Q16206 610 aaKnown RBP5.34□□□□□ -1.55
SF3B6-202ENST00000478050 TUBB8Q3ZCM7 444 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 CEP55Q53EZ4 464 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 LDLRAD1Q5T700 205 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 TCERG1LQ5VWI1 586 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 ALG1LQ6GMV1 187 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 ALKBH5Q6P6C2 394 aaKnown RBP5.34□□□□□ -1.55
SF3B6-202ENST00000478050 ZNF574Q6ZN55 896 aaPredicted RBP5.34□□□□□ -1.55
SF3B6-202ENST00000478050 NIPA1Q7RTP0 329 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 ZNF571Q7Z3V5 609 aaPredicted RBP5.34□□□□□ -1.55
SF3B6-202ENST00000478050 NT5DC4Q86YG4 428 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 TPH2Q8IWU9 490 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 GSPT2Q8IYD1 628 aaKnown RBP5.34□□□□□ -1.55
SF3B6-202ENST00000478050 GJD3Q8N144 294 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 MREGQ8N565 214 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 MYCT1Q8N699 235 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 EIF1ADQ8N9N8 165 aaKnown RBP5.34□□□□□ -1.55
SF3B6-202ENST00000478050 USP38Q8NB14 1042 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 TTC16Q8NEE8 873 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 FAM76AQ8TAV0 307 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 ACTRT1Q8TDG2 376 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 TMEM40Q8WWA1 233 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 SLC35C1Q96A29 364 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 BORCS6Q96GS4 357 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 PRMT6Q96LA8 375 aaPredicted RBP5.34□□□□□ -1.55
SF3B6-202ENST00000478050 INPP4AQ96PE3 977 aaPredicted RBP5.34□□□□□ -1.55
SF3B6-202ENST00000478050 PSMB7Q99436 277 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 SH3GL2Q99962 352 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 DEFB129Q9H1M3 183 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 VCPKMTQ9H867 229 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 ZNF408Q9H9D4 720 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 RC3H2Q9HBD1 1191 aaKnown RBP5.34□□□□□ -1.55
SF3B6-202ENST00000478050 SIX2Q9NPC8 291 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 RBM12Q9NTZ6 932 aaKnown RBP5.34□□□□□ -1.55
SF3B6-202ENST00000478050 RGL1Q9NZL6 768 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 GCNT4Q9P109 453 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 ZNF70Q9UC06 446 aaPredicted RBP5.34□□□□□ -1.55
SF3B6-202ENST00000478050 ADAMTS1Q9UHI8 967 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 FEM1BQ9UK73 627 aa5.34□□□□□ -1.55
SF3B6-202ENST00000478050 COL11A1P12107 1806 aaPredicted RBP5.34□□□□□ -1.55
SF3B6-202ENST00000478050 ARHGEF35A5YM69 484 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 GOLGA6CA6NDK9 693 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 YDJCA8MPS7 323 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 TCP10L2B9ZVM9 353 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 AGPSO00116 658 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 PGRMC1O00264 195 aaKnown RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 KCNK3O14649 394 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 CLIC2O15247 247 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 P4HA2O15460 535 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 EIF4EBP3O60516 100 aaPredicted RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 SHOX2O60902 331 aaPredicted RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 PHACTR2O75167 634 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 HEXIM1O94992 359 aaKnown RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 DLGAP3O95886 979 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 RPLP1P05386 114 aaKnown RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 GOLGA6DP0CG33 693 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 ZNF865P0CJ78 1059 aaPredicted RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 PCSK2P16519 638 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 EN2P19622 333 aaPredicted RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 NMT1P30419 496 aaKnown RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 SOX5P35711 763 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 NOP2P46087 812 aaKnown RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 FMO5P49326 533 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 HUNKP57058 714 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 SNRPFP62306 86 aaKnown RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 MYL7Q01449 175 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 SLC7A5Q01650 507 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 GHRHRQ02643 423 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 GSTM4Q03013 218 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 ORC1Q13415 861 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 CUL1Q13616 776 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 DLGAP5Q15398 846 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 CLUL1Q15846 466 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 PPP2R5EQ16537 467 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 CFAP58Q5T655 872 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 CCDC174Q6PII3 467 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 B3GNT9Q6UX72 402 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 ZNF720Q7Z2F6 126 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 MIER3Q7Z3K6 550 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 SPRED2Q7Z698 418 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 SLFN11Q7Z7L1 901 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 FAM83AQ86UY5 434 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 FAM178BQ8IXR5 827 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 C12orf56Q8IXR9 622 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 SPICE1Q8N0Z3 855 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 SAMD3Q8N6K7 520 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 TMEM102Q8N9M5 508 aaPredicted RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 LRRC57Q8N9N7 239 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 C1orf131Q8NDD1 294 aaKnown RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 CYP2W1Q8TAV3 490 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 ACER1Q8TDN7 264 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 PIGOQ8TEQ8 1089 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 U2AF1L4Q8WU68 220 aaKnown RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 HDAC7Q8WUI4 952 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 ZNF296Q8WUU4 475 aaPredicted RBP5.33□□□□□ -1.56
SF3B6-202ENST00000478050 TMEM174Q8WUU8 243 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 DPF3Q92784 378 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 GATA6Q92908 595 aa5.33□□□□□ -1.56
SF3B6-202ENST00000478050 RNF34Q969K3 372 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms