RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 THAP12O43422 761 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 MMEP08473 750 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 CHRNB2P17787 502 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 RPL9P32969 192 aaKnown RBP13.69□□□□□ -0.22
VPS13D-205ENST00000473099 INCA1Q0VD86 236 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 GLRA4Q5JXX5 417 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 SCARA5Q6ZMJ2 495 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 DPH6Q7L8W6 267 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 ECHDC2Q86YB7 292 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 UBE2Q2Q8WVN8 375 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 SEPT8Q92599 483 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 TSPYL2Q9H2G4 693 aaPredicted RBP13.69□□□□□ -0.22
VPS13D-205ENST00000473099 GDAP2Q9NXN4 497 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 KIAA1257Q9ULG3 409 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 BARX2Q9UMQ3 279 aaPredicted RBP13.69□□□□□ -0.22
VPS13D-205ENST00000473099 CEP83Q9Y592 693 aa13.69□□□□□ -0.22
VPS13D-205ENST00000473099 NCANO14594 1321 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 A0A0U1RQJ8 604 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 ARL5CA6NH57 179 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 C9IYK1 514 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 MGEA5O60502 916 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 PQBP1O60828 265 aaKnown RBP13.68□□□□□ -0.22
VPS13D-205ENST00000473099 CILPO75339 1184 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 LSM8O95777 96 aaKnown RBP13.68□□□□□ -0.22
VPS13D-205ENST00000473099 WEE2P0C1S8 567 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 CD58P19256 250 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 MLH1P40692 756 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 GUCY2FP51841 1108 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 GALCP54803 685 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 GRIK3Q13003 919 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 MBTPS1Q14703 1052 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 TCEAL1Q15170 157 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 STILQ15468 1287 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 CLEC16AQ2KHT3 1053 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 PLEKHG4Q58EX7 1191 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 TAF3Q5VWG9 929 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 ACAD10Q6JQN1 1059 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 AGMOQ6ZNB7 445 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 UNC93AQ86WB7 457 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 RHOT2Q8IXI1 618 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 SLC35F6Q8N357 371 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 ATRIPQ8WXE1 791 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 RFFLQ8WZ73 363 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 C18orf25Q96B23 403 aaPredicted RBP13.68□□□□□ -0.22
VPS13D-205ENST00000473099 ELMO3Q96BJ8 720 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 DDX27Q96GQ7 796 aaKnown RBP13.68□□□□□ -0.22
VPS13D-205ENST00000473099 VCPIP1Q96JH7 1222 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 UROC1Q96N76 676 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 MMS19Q96T76 1030 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 GAD1Q99259 594 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 NAPGQ99747 312 aaPredicted RBP13.68□□□□□ -0.22
VPS13D-205ENST00000473099 ZNF518BQ9C0D4 1074 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 ELAC1Q9H777 363 aaKnown RBP13.68□□□□□ -0.22
VPS13D-205ENST00000473099 PCDHGC3Q9UN70 934 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 POLIQ9UNA4 740 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 PDE4DIPQ5VU43 2346 aa13.68□□□□□ -0.22
VPS13D-205ENST00000473099 ARHGEF37A1IGU5 675 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 MACROD2A1Z1Q3 448 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 KPNA7A9QM74 516 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 FTLP02792 175 aaPredicted RBP13.67□□□□□ -0.22
VPS13D-205ENST00000473099 CYP1A1P04798 512 aaPredicted RBP13.67□□□□□ -0.22
VPS13D-205ENST00000473099 MYBL1P10243 752 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 MNX1P50219 401 aaPredicted RBP13.67□□□□□ -0.22
VPS13D-205ENST00000473099 HADHBP55084 474 aaKnown RBP13.67□□□□□ -0.22
VPS13D-205ENST00000473099 FAM189BP81408 668 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 ZNF598Q86UK7 904 aaKnown RBP13.67□□□□□ -0.22
VPS13D-205ENST00000473099 URGCPQ8TCY9 931 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 ZNF606Q8WXB4 792 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 WDR24Q96S15 920 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 TMEM106CQ9BVX2 250 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 NT5C1AQ9BXI3 368 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 HIPK3Q9H422 1215 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 SMYD3Q9H7B4 428 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 KANSL3Q9P2N6 904 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 TRIM10Q9UDY6 481 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 SNX9Q9Y5X1 595 aa13.67□□□□□ -0.22
VPS13D-205ENST00000473099 HUS1O60921 280 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 VDRP11473 427 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 UNGP13051 313 aaPredicted RBP13.66□□□□□ -0.22
VPS13D-205ENST00000473099 RFC2P35250 354 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 NSFP46459 744 aaKnown RBP13.66□□□□□ -0.22
VPS13D-205ENST00000473099 RAD23BP54727 409 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 NAP1L1P55209 391 aaKnown RBP13.66□□□□□ -0.22
VPS13D-205ENST00000473099 GPC5P78333 572 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 CENPCQ03188 943 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 GLB1LQ6UWU2 654 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 SYCE1Q8N0S2 351 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 TOP6BLQ8N6T0 577 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 MSANTD4Q8NCY6 345 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 GSTCDQ8NEC7 633 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 APPL2Q8NEU8 664 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 SPATA18Q8TC71 538 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 TMEM176AQ96HP8 235 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 ZFP42Q96MM3 310 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 PCDHB18PQ96TA0 734 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 PACSIN1Q9BY11 444 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 OSBPL7Q9BZF2 842 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 IRX2Q9BZI1 471 aaPredicted RBP13.66□□□□□ -0.22
VPS13D-205ENST00000473099 CXCL16Q9H2A7 254 aa13.66□□□□□ -0.22
VPS13D-205ENST00000473099 C11orf49Q9H6J7 331 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms