RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 GZMAP12544 262 aa19.95■□□□□ 0.78
CLN3-204ENST00000357857 LRPAP1P30533 357 aa19.95■□□□□ 0.78
CLN3-204ENST00000357857 PNPLA4P41247 253 aa19.95■□□□□ 0.78
CLN3-204ENST00000357857 FAAP100Q0VG06 881 aa19.95■□□□□ 0.78
CLN3-204ENST00000357857 ZNF598Q86UK7 904 aaKnown RBP19.95■□□□□ 0.78
CLN3-204ENST00000357857 DNAAF5Q86Y56 855 aa19.95■□□□□ 0.78
CLN3-204ENST00000357857 LINC01599Q8WXQ3 324 aa19.95■□□□□ 0.78
CLN3-204ENST00000357857 MMS19Q96T76 1030 aa19.95■□□□□ 0.78
CLN3-204ENST00000357857 HIPK3Q9H422 1215 aa19.95■□□□□ 0.78
CLN3-204ENST00000357857 MIOSQ9NXC5 875 aa19.95■□□□□ 0.78
CLN3-204ENST00000357857 TAS2R14Q9NYV8 317 aa19.95■□□□□ 0.78
CLN3-204ENST00000357857 C9IYK1 514 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 THAP12O43422 761 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 RTN2O75298 545 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 CASQ1P31415 396 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 SCNN1GP51170 649 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 GALCP54803 685 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 GPNMBQ14956 572 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 ZNF394Q53GI3 561 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 PLEKHG4Q58EX7 1191 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 SLC24A5Q71RS6 500 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 SLC35F6Q8N357 371 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 TTC39CQ8N584 583 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 ISCUQ9H1K1 167 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 TSPYL2Q9H2G4 693 aaPredicted RBP19.94■□□□□ 0.78
CLN3-204ENST00000357857 PUF60Q9UHX1 559 aaKnown RBP19.94■□□□□ 0.78
CLN3-204ENST00000357857 SNX9Q9Y5X1 595 aa19.94■□□□□ 0.78
CLN3-204ENST00000357857 BTNL10A8MVZ5 291 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 TAF6P49848 677 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 AFF1P51825 1210 aaKnown RBP19.93■□□□□ 0.78
CLN3-204ENST00000357857 RNF10Q8N5U6 811 aaKnown RBP19.93■□□□□ 0.78
CLN3-204ENST00000357857 TET1Q8NFU7 2136 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 PDCL3Q9H2J4 239 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 PRDM10Q9NQV6 1147 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 FANCGO15287 622 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 CILPO75339 1184 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 EOMESO95936 686 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 INCA1Q0VD86 236 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 CLEC16AQ2KHT3 1053 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 SV2CQ496J9 727 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 TRIM72Q6ZMU5 477 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 FAM43BQ6ZT52 329 aaPredicted RBP19.93■□□□□ 0.78
CLN3-204ENST00000357857 DBF4BQ8NFT6 615 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 ZNF606Q8WXB4 792 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 SEPT8Q92599 483 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 C11orf49Q9H6J7 331 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 SALL4Q9UJQ4 1053 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 BARX2Q9UMQ3 279 aaPredicted RBP19.93■□□□□ 0.78
CLN3-204ENST00000357857 ATP11BQ9Y2G3 1177 aa19.93■□□□□ 0.78
CLN3-204ENST00000357857 ANKRD62A6NC57 917 aa19.92■□□□□ 0.78
CLN3-204ENST00000357857 MOCS3O95396 460 aa19.92■□□□□ 0.78
CLN3-204ENST00000357857 PARNO95453 639 aaKnown RBP19.92■□□□□ 0.78
CLN3-204ENST00000357857 FTLP02792 175 aaPredicted RBP19.92■□□□□ 0.78
CLN3-204ENST00000357857 PAEPP09466 180 aa19.92■□□□□ 0.78
CLN3-204ENST00000357857 TMEM253P0C7T8 217 aa19.92■□□□□ 0.78
CLN3-204ENST00000357857 RAD23BP54727 409 aa19.92■□□□□ 0.78
CLN3-204ENST00000357857 FAM189BP81408 668 aa19.92■□□□□ 0.78
CLN3-204ENST00000357857 WHAMMQ8TF30 809 aa19.92■□□□□ 0.78
CLN3-204ENST00000357857 CTNNBL1Q8WYA6 563 aaPredicted RBP19.92■□□□□ 0.78
CLN3-204ENST00000357857 APBB2Q92870 758 aa19.92■□□□□ 0.78
CLN3-204ENST00000357857 PAWRQ96IZ0 340 aaKnown RBP19.92■□□□□ 0.78
CLN3-204ENST00000357857 NOX5Q96PH1 765 aa19.92■□□□□ 0.78
CLN3-204ENST00000357857 PPP1R12CQ9BZL4 782 aa19.92■□□□□ 0.78
CLN3-204ENST00000357857 GDAP2Q9NXN4 497 aa19.92■□□□□ 0.78
CLN3-204ENST00000357857 KIAA0100Q14667 2235 aaKnown RBP19.92■□□□□ 0.78
CLN3-204ENST00000357857 KPNA7A9QM74 516 aa19.91■□□□□ 0.78
CLN3-204ENST00000357857 TACC1O75410 805 aa19.91■□□□□ 0.78
CLN3-204ENST00000357857 ABCB4P21439 1286 aa19.91■□□□□ 0.78
CLN3-204ENST00000357857 BRD2P25440 801 aaKnown RBP19.91■□□□□ 0.78
CLN3-204ENST00000357857 NAP1L1P55209 391 aaKnown RBP19.91■□□□□ 0.78
CLN3-204ENST00000357857 GRIK3Q13003 919 aa19.91■□□□□ 0.78
CLN3-204ENST00000357857 ACAD10Q6JQN1 1059 aa19.91■□□□□ 0.78
CLN3-204ENST00000357857 SCLYQ96I15 445 aa19.91■□□□□ 0.78
CLN3-204ENST00000357857 TMEM106CQ9BVX2 250 aa19.91■□□□□ 0.78
CLN3-204ENST00000357857 WNT8AQ9H1J5 351 aa19.91■□□□□ 0.78
CLN3-204ENST00000357857 HMGXB4Q9UGU5 601 aa19.91■□□□□ 0.78
CLN3-204ENST00000357857 INPP5FQ9Y2H2 1132 aa19.91■□□□□ 0.78
CLN3-204ENST00000357857 NCANO14594 1321 aa19.91■□□□□ 0.78
CLN3-204ENST00000357857 A0A0A6YYK5 440 aaPredicted RBP19.9■□□□□ 0.78
CLN3-204ENST00000357857 FAM170AA1A519 330 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 SPTLC1O15269 473 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 INPPL1O15357 1258 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 BUB1O43683 1085 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 CAPN2P17655 700 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 CCL23P55773 120 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 SLC4A11Q8NBS3 891 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 TRIM58Q8NG06 486 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 TMEM176AQ96HP8 235 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 TWNKQ96RR1 684 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 MRPL45Q9BRJ2 306 aaKnown RBP19.9■□□□□ 0.78
CLN3-204ENST00000357857 ELOVL4Q9GZR5 314 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 CAPN6Q9Y6Q1 641 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 POMCP01189 267 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 CYP1A1P04798 512 aaPredicted RBP19.9■□□□□ 0.78
CLN3-204ENST00000357857 UNGP13051 313 aaPredicted RBP19.9■□□□□ 0.78
CLN3-204ENST00000357857 CD19P15391 556 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 RPL9P32969 192 aaKnown RBP19.9■□□□□ 0.78
CLN3-204ENST00000357857 NDST1P52848 882 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 LILRA4P59901 499 aa19.9■□□□□ 0.78
CLN3-204ENST00000357857 GLB1LQ6UWU2 654 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms