RNA–Protein interactions for RNA: ENST00000345617.7

HDAC4-201, Transcript of histone deacetylase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC4, Length 8,976 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-201ENST00000345617 ZNF560Q96MR9 790 aa20.22■□□□□ 0.83
HDAC4-201ENST00000345617 ABCA9Q8IUA7 1624 aa20.22■□□□□ 0.83
HDAC4-201ENST00000345617 USP11P51784 963 aa20.22■□□□□ 0.83
HDAC4-201ENST00000345617 ZNF568Q3ZCX4 644 aa20.22■□□□□ 0.83
HDAC4-201ENST00000345617 NUDT18Q6ZVK8 323 aa20.22■□□□□ 0.83
HDAC4-201ENST00000345617 ATPAF2Q8N5M1 289 aa20.22■□□□□ 0.83
HDAC4-201ENST00000345617 RSAD1Q9HA92 442 aa20.22■□□□□ 0.83
HDAC4-201ENST00000345617 FASTKD5Q7L8L6 764 aaKnown RBP20.21■□□□□ 0.83
HDAC4-201ENST00000345617 OSBPL10Q9BXB5 764 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 EXOSC4Q9NPD3 245 aaKnown RBP20.21■□□□□ 0.83
HDAC4-201ENST00000345617 SFSWAPQ12872 951 aaKnown RBP20.21■□□□□ 0.83
HDAC4-201ENST00000345617 ARID5BQ14865 1188 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 TMEM179Q6ZVK1 233 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 KRT74Q7RTS7 529 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 HMG20AQ9NP66 347 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 TPI1P60174 286 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 MED15Q96RN5 788 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 C1orf50Q9BV19 199 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 LIMA1Q9UHB6 759 aaKnown RBP20.21■□□□□ 0.83
HDAC4-201ENST00000345617 ECSITQ9BQ95 431 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 KLHL20Q9Y2M5 609 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 CFAP99D6REC4 459 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 NEMP1O14524 444 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 BCL10O95999 233 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 MAPK1P28482 360 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 ADORA1P30542 326 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 CCT8P50990 548 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 NAB2Q15742 525 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 DSTYKQ6XUX3 929 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 AGPAT1Q99943 283 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 NAT9Q9BTE0 207 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 EFCAB1Q9HAE3 211 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 STON1Q9Y6Q2 735 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 EIF2B2P49770 351 aaKnown RBP20.21■□□□□ 0.83
HDAC4-201ENST00000345617 CACNB1Q02641 598 aaPredicted RBP20.21■□□□□ 0.83
HDAC4-201ENST00000345617 MTERF2Q49AM1 385 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 MMRN1Q13201 1228 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 SPICE1Q8N0Z3 855 aa20.21■□□□□ 0.83
HDAC4-201ENST00000345617 RBBP8NLQ8NC74 664 aaPredicted RBP20.21■□□□□ 0.83
HDAC4-201ENST00000345617 RINLQ6ZS11 566 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 RNF25Q96BH1 459 aaPredicted RBP20.2■□□□□ 0.82
HDAC4-201ENST00000345617 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.2■□□□□ 0.82
HDAC4-201ENST00000345617 HECW2Q9P2P5 1572 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 CDC42EP1Q00587 391 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 GPD1LQ8N335 351 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 URGCPQ8TCY9 931 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 C1orf54Q8WWF1 131 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 TNIP3Q96KP6 325 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 EFNA5P52803 228 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 SLC35G2Q8TBE7 412 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 SMARCAD1Q9H4L7 1026 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 IL6STP40189 918 aaPredicted RBP20.2■□□□□ 0.82
HDAC4-201ENST00000345617 PDK1Q15118 436 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 CCNJLQ8IV13 435 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 TASP1Q9H6P5 420 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 BARHL2Q9NY43 387 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 NCKAP5LQ9HCH0 1330 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 MCRS1Q96EZ8 462 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 FBXO40Q9UH90 709 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 DFFAO00273 331 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 PDIA5Q14554 519 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 LONRF1Q17RB8 773 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 TAS2R42Q7RTR8 314 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 USP13Q92995 863 aaPredicted RBP20.2■□□□□ 0.82
HDAC4-201ENST00000345617 TUFT1Q9NNX1 390 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 RGL1Q9NZL6 768 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 SLCO1B7G3V0H7 640 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 EDRF1Q3B7T1 1238 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 CCDC144BQ3MJ40 725 aa20.2■□□□□ 0.82
HDAC4-201ENST00000345617 ATP10AO60312 1499 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 THRAP10827 490 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 NEK10Q6ZWH5 1172 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 CCDC80Q76M96 950 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 PCMTD2Q9NV79 361 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 RNF17Q9BXT8 1623 aaKnown RBP20.19■□□□□ 0.82
HDAC4-201ENST00000345617 NCK2O43639 380 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 THEMIS2Q5TEJ8 643 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 PPIL6Q8IXY8 311 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 INTS2Q9H0H0 1204 aaKnown RBP20.19■□□□□ 0.82
HDAC4-201ENST00000345617 TRIM49BA6NDI0 452 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 TKTP29401 623 aaKnown RBP20.19■□□□□ 0.82
HDAC4-201ENST00000345617 R3HDM1Q15032 1099 aaKnown RBP20.19■□□□□ 0.82
HDAC4-201ENST00000345617 SLC27A3Q5K4L6 730 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 C3orf62Q6ZUJ4 267 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 E2F7Q96AV8 911 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 DHX35Q9H5Z1 703 aaKnown RBP20.19■□□□□ 0.82
HDAC4-201ENST00000345617 TJP2Q9UDY2 1190 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 UBA6A0AVT1 1052 aaPredicted RBP20.19■□□□□ 0.82
HDAC4-201ENST00000345617 C18orf8Q96DM3 657 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 BDH2Q9BUT1 245 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 NUDT2P50583 147 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 TARSP26639 723 aaKnown RBP20.19■□□□□ 0.82
HDAC4-201ENST00000345617 SPRTNQ9H040 489 aaPredicted RBP20.19■□□□□ 0.82
HDAC4-201ENST00000345617 TBX22Q9Y458 520 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 A0A087WWV3 80 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 PIK3R1P27986 724 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 TRIM25Q14258 630 aaKnown RBP20.19■□□□□ 0.82
HDAC4-201ENST00000345617 TSNQ15631 228 aaKnown RBP20.19■□□□□ 0.82
HDAC4-201ENST00000345617 SVOPQ8N4V2 548 aa20.19■□□□□ 0.82
HDAC4-201ENST00000345617 LRRC24Q50LG9 513 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms