RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SH3TC2Q8TF17 1288 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 MMS19Q96T76 1030 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 VPS33BQ9H267 617 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 GGNBP2Q9H3C7 697 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 CCDC134Q9H6E4 229 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ZNF639Q9UID6 485 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 SIK3Q9Y2K2 1263 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 CHURC1-FNTBB4DL54 471 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 EIF3HO15372 352 aaKnown RBP eCLIP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ZW10O43264 779 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ANGPTL7O43827 346 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ATP9AO75110 1047 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 DNAJA1P31689 397 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 SCRN1Q12765 414 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 HSDL1Q3SXM5 330 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 LACTB2Q53H82 288 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ALKBH2Q6NS38 261 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 C11orf96Q7Z7L8 435 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 MAGEE2Q8TD90 523 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 C11orf84Q9BUA3 381 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 WDR12Q9GZL7 423 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 PCDH12Q9NPG4 1184 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 DGKBQ9Y6T7 804 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 NEDD8-MDP1E9PL57 170 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 TEX46H3BTG2 121 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 MLNP12872 115 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 EPB42P16452 691 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 NFKBIAP25963 317 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 CASP5P51878 434 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 CDH11P55287 796 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 RNF4P78317 190 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ADAM17P78536 824 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 MTX1Q13505 466 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 TATDN3Q17R31 274 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 RNASE12Q5GAN4 147 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 TSHZ3Q63HK5 1081 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 RASGRP2Q7LDG7 609 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 CAND1Q86VP6 1230 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 MIER2Q8N344 545 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 SPERTQ8NA61 448 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 EEF1AKMT1Q8WVE0 214 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 NELFBQ8WX92 580 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 FOXN4Q96NZ1 517 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 FOXP3Q9BZS1 431 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ETNK1Q9HBU6 452 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 TAB2Q9NYJ8 693 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 PLEKHH1Q9ULM0 1364 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 PSDA5PKW4 1024 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 CAPN8A6NHC0 703 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 F8VZ95 297 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 FOXN3O00409 490 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 SRGAP2O75044 1071 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 CA4P22748 312 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 CHMP24386 653 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 CALML3P27482 149 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 POU1F1P28069 291 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 TGFBR2P37173 567 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ACADSBP45954 432 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 C21orf59P57076 290 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 DNM1Q05193 864 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 PDE4DQ08499 809 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 HIC1Q14526 733 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ALKBH5Q6P6C2 394 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 FRMD5Q7Z6J6 570 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 OR8H3Q8N146 312 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 HDDC3Q8N4P3 179 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 RDH13Q8NBN7 331 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 PPP1R13LQ8WUF5 828 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 BIVM-ERCC5R4GMW8 1640 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 EXOC1LA0A1B0GW35 172 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 DDX39AO00148 427 aaKnown RBP7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 PSMD12O00232 456 aaPredicted RBP7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 ZBTB43O43298 467 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 AHSA1O95433 338 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 LBPP18428 481 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 RGS19P49795 217 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 KDSRQ06136 332 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 DNAJB7Q7Z6W7 309 aaPredicted RBP7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 SRBD1Q8N5C6 995 aaKnown RBP7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 LRRC17Q8N6Y2 441 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 EEF2KMTQ96G04 330 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 COG8Q96MW5 612 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 PTCHD1Q96NR3 888 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 ZNF649Q9BS31 505 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 DCUN1D5Q9BTE7 237 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 LRRC2Q9BYS8 371 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 IL1RL2Q9HB29 575 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 SPTLC3Q9NUV7 552 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 DENND2AQ9ULE3 1009 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 GNEQ9Y223 722 aaKnown RBP7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 EXOC6BQ9Y2D4 811 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 ZBTB1Q9Y2K1 713 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 MRPS23Q9Y3D9 190 aaKnown RBP7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 ASMTLO95671 621 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 NTRK1P04629 796 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 LDHCP07864 332 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 PET100P0DJ07 73 aa7.96□□□□□ -1.13
LIMCH1-201ENST00000313860 RCVRNP35243 200 aa7.96□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms