RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 USP29Q9HBJ7 922 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 ZNF287Q9HBT7 754 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 UCKL1Q9NWZ5 548 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 HPSEQ9Y251 543 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 WASF2Q9Y6W5 498 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SBNO2Q9Y2G9 1366 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 GAKO14976 1311 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 A0A087WZG4 1122 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 FAM47DPA6NHR8 397 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 H3BNX3 289 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 PODXLO00592 558 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SULT1B1O43704 296 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 RNASEH1O60930 286 aaKnown RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 ADAM23O75077 832 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 BMP10O95393 424 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 NUDT17P0C025 328 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 ENPP1P22413 925 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 EPHB1P54762 984 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 MARSP56192 900 aaKnown RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 RAPGEF1Q13905 1077 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 INSCQ1MX18 579 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SEL1L2Q5TEA6 688 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 TPTE2Q6XPS3 522 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 CHST3Q7LGC8 479 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 TMPRSS6Q8IU80 811 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 UNC45BQ8IWX7 931 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SIX6OS1Q8N1H7 587 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 ELMOD1Q8N336 334 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 LINC00469Q8N7U9 141 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 TSPAN14Q8NG11 270 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 HSPH1Q92598 858 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SEPT8Q92599 483 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 HDAC2Q92769 488 aaKnown RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 GCNAQ96QF7 691 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 CTRCQ99895 268 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 NDFIP2Q9NV92 336 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 TRPC5Q9UL62 973 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 DNM3Q9UQ16 869 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 MTO1Q9Y2Z2 717 aaKnown RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SQORQ9Y6N5 450 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 TRPM1Q7Z4N2 1603 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 KDM5AP29375 1690 aaKnown RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 A0A1W2PQ72 361 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 MAGEB16A2A368 324 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 BTBD11A6QL63 1104 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 H3BRJ5 948 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 PCP11498 1178 aaKnown RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 CRABP2P29373 138 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 PBX1P40424 430 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 PPP2R2BQ00005 443 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 MDM2Q00987 491 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 KLHL30Q0D2K2 578 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SNX17Q15036 470 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 CHRNA2Q15822 529 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 UAP1Q16222 522 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 NFE2Q16621 373 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 HP1BP3Q5SSJ5 553 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SPOPLQ6IQ16 392 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 RFWD3Q6PCD5 774 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 APOA5Q6Q788 366 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 GPIHBP1Q8IV16 184 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 REXO1Q8N1G1 1221 aaKnown RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SRBD1Q8N5C6 995 aaKnown RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 NATD1Q8N6N6 113 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 TLR10Q9BXR5 811 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 PLEKHA5Q9HAU0 1116 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 GPAMQ9HCL2 828 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 ASIC3Q9UHC3 531 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SOX13Q9UN79 622 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 DNMT1P26358 1616 aaKnown RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 OVOS2A0A0G2JMS6 1433 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 OVOS2A0A0J9YW53 1432 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 OVOS2Q6IE36 1432 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 A0A0D9SFI3 127 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 FAM172BPA6NC97 362 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 FADS2P1A8MWK0 482 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 BCL10O95999 233 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 S100A6P06703 90 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 FGFR4P22455 802 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 PRCPP42785 496 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 CDK9P50750 372 aaKnown RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 ATN1P54259 1190 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 ASIC2Q16515 512 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 MPRIPQ6WCQ1 1025 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 PEX13Q92968 403 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 PMEPA1Q969W9 287 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SLC10A4Q96EP9 437 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 PRICKLE1Q96MT3 831 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 MAP3K14Q99558 947 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 CHID1Q9BWS9 393 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SLC26A6Q9BXS9 759 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 NAPBQ9H115 298 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 TUT1Q9H6E5 874 aaKnown RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 HMG20AQ9NP66 347 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 PPARGC1AQ9UBK2 798 aaKnown RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 HERC5Q9UII4 1024 aaKnown RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 HDAC9Q9UKV0 1011 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 MAP3K15Q6ZN16 1313 aa6.01□□□□□ -1.45
SCN1A-216ENST00000637968 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms