RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TROVE2P10155 538 aaKnown RBP eCLIP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 VCAM1P19320 739 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 HOXA13P31271 388 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 SFNP31947 248 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 RFC2P35250 354 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 PSMC4P43686 418 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 SLC8A3P57103 927 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 POU5F1Q01860 360 aaKnown RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 ENPEPQ07075 957 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 CRYMQ14894 314 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 TSNAXIP1Q2TAA8 658 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 GJB7Q6PEY0 223 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 MIGA2Q7L4E1 593 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 LRRC34Q8IZ02 419 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 C12orf50Q8NA57 414 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 PRMT1Q99873 361 aaKnown RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 HSD17B14Q9BPX1 270 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 TXLNGYQ9BZA5 131 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 EPB41L4BQ9H329 900 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 OSGEPQ9NPF4 335 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 DMAC2Q9NW81 257 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 RAB20Q9NX57 234 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 HSPBP1Q9NZL4 362 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 TMOD4Q9NZQ9 345 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 CNOT8Q9UFF9 292 aaKnown RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 SERPINA10Q9UK55 444 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 PCDHA3Q9Y5H8 950 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 ACTL7BQ9Y614 415 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 COL4A4P53420 1690 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 SFI1A8K8P3 1242 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 FAM86B1E9PN63 330 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 FOXN3O00409 490 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 GH2P01242 217 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 LMNAP02545 664 aaKnown RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 CYP1A2P05177 515 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 FAM86B2P0C5J1 330 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 DESP17661 470 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 MAGEA10P43363 369 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 QARSP47897 775 aaKnown RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 GCLMP48507 274 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 GSCP56915 257 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 KRT17Q04695 432 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 CYP1B1Q16678 543 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 DOK7Q18PE1 504 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 BRDTQ58F21 947 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 HHATQ5VTY9 493 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 FKBP1CQ5VVH2 108 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 NUGGCQ68CJ6 796 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 ZNF280DQ6N043 979 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 DGLUCYQ7Z3D6 616 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 FBXL13Q8NEE6 735 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 RDM1Q8NG50 284 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 TMC2Q8TDI7 906 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 ATP8B4Q8TF62 1192 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 C7orf43Q8WVR3 580 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 CCT6BQ92526 530 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 GLG1Q92896 1179 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 ART4Q93070 314 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 RBM41Q96IZ5 413 aaKnown RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 ECT2Q9H8V3 914 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 NOD2Q9HC29 1040 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 TMEM8AQ9HCN3 771 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 DDX4Q9NQI0 724 aaKnown RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 AVENQ9NQS1 362 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 DONSONQ9NYP3 566 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 AJAP1Q9UKB5 411 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 PRR12Q9ULL5 1215 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 SMG5Q9UPR3 1016 aaKnown RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 PPME1Q9Y570 386 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 SORBS3O60504 671 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 GFRA3O60609 400 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 PSMD10O75832 226 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 SLITRK3O94933 977 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 GDF11O95390 407 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 NEFHP12036 1026 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 BRAFP15056 766 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 FGFR4P22455 802 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 SLCO1A2P46721 670 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 RPL21P46778 160 aaKnown RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 KRT76Q01546 638 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 CDR2Q01850 454 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 SPARCL1Q14515 664 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 ZC2HC1CQ53FD0 456 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 FAM133BQ5BKY9 247 aaKnown RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 KCNV1Q6PIU1 500 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 TBC1D1Q86TI0 1168 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 NLRX1Q86UT6 975 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 KIAA0825Q8IV33 1275 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 APLFQ8IW19 511 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 RHOT1Q8IXI2 618 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 ARHGAP24Q8N264 748 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 AGGF1Q8N302 714 aaeCLIP4.22□□□□□ -1.73
SCN1A-214ENST00000637038 MGARPQ8TDB4 240 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 ATP6V0A1Q93050 837 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 C18orf8Q96DM3 657 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 SMC6Q96SB8 1091 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 GPR88Q9GZN0 384 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 NEUROG2Q9H2A3 272 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 LRRC19Q9H756 370 aa4.22□□□□□ -1.73
SCN1A-214ENST00000637038 C17orf75Q9HAS0 396 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms