RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CDK17Q00537 523 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 PTK7Q13308 1070 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 PDCD2Q16342 344 aaPredicted RBP14.72□□□□□ -0.05
CPSF1-212ENST00000616140 LRRC36Q1X8D7 754 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 DNAAF5Q86Y56 855 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 OSGEPQ9NPF4 335 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 PCMTD2Q9NV79 361 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 PIN4Q9Y237 131 aaKnown RBP14.72□□□□□ -0.05
CPSF1-212ENST00000616140 TFRCP02786 760 aaKnown RBP14.72□□□□□ -0.05
CPSF1-212ENST00000616140 HSD17B4P51659 736 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 CASP7P55210 303 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 AGGF1Q8N302 714 aaeCLIP14.72□□□□□ -0.05
CPSF1-212ENST00000616140 FBXL16Q8N461 479 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 FEZF2Q8TBJ5 459 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 MTMR8Q96EF0 704 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 EPAS1Q99814 870 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 NIF3L1Q9GZT8 377 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 ANKEF1Q9NU02 776 aa14.72□□□□□ -0.05
CPSF1-212ENST00000616140 CNOT7Q9UIV1 285 aaKnown RBP14.72□□□□□ -0.05
CPSF1-212ENST00000616140 PYGBP11216 843 aa14.71□□□□□ -0.05
CPSF1-212ENST00000616140 TPI1P60174 286 aa14.71□□□□□ -0.05
CPSF1-212ENST00000616140 TMEM132DQ14C87 1099 aa14.71□□□□□ -0.05
CPSF1-212ENST00000616140 ICA1LQ8NDH6 482 aa14.71□□□□□ -0.05
CPSF1-212ENST00000616140 ACSF2Q96CM8 615 aaPredicted RBP14.71□□□□□ -0.05
CPSF1-212ENST00000616140 ATG4CQ96DT6 458 aa14.71□□□□□ -0.05
CPSF1-212ENST00000616140 CLMNQ96JQ2 1002 aa14.71□□□□□ -0.05
CPSF1-212ENST00000616140 ADGRB1O14514 1584 aa14.71□□□□□ -0.05
CPSF1-212ENST00000616140 FNTAP49354 379 aa14.71□□□□□ -0.05
CPSF1-212ENST00000616140 GIT2Q14161 759 aa14.71□□□□□ -0.05
CPSF1-212ENST00000616140 KCNV1Q6PIU1 500 aa14.71□□□□□ -0.05
CPSF1-212ENST00000616140 LVRNQ6Q4G3 990 aa14.71□□□□□ -0.05
CPSF1-212ENST00000616140 YY1AP1Q9H869 796 aa14.71□□□□□ -0.05
CPSF1-212ENST00000616140 ANKZF1Q9H8Y5 726 aa14.71□□□□□ -0.05
CPSF1-212ENST00000616140 ASB14A6NK59 587 aa14.71□□□□□ -0.06
CPSF1-212ENST00000616140 NEMP1O14524 444 aa14.71□□□□□ -0.06
CPSF1-212ENST00000616140 AFG1LQ8WV93 481 aa14.71□□□□□ -0.06
CPSF1-212ENST00000616140 TAAR1Q96RJ0 339 aa14.71□□□□□ -0.06
CPSF1-212ENST00000616140 TBX20Q9UMR3 447 aa14.71□□□□□ -0.06
CPSF1-212ENST00000616140 NRXN1Q9ULB1 1477 aa14.71□□□□□ -0.06
CPSF1-212ENST00000616140 MAFGO15525 162 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 KRT4P19013 534 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 INPP1P49441 399 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 SARSP49591 514 aaKnown RBP14.7□□□□□ -0.06
CPSF1-212ENST00000616140 CACNB2Q08289 660 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-212ENST00000616140 BTBD8Q5XKL5 378 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 ZNF571Q7Z3V5 609 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-212ENST00000616140 LONP2Q86WA8 852 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 LRRC34Q8IZ02 419 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 SP110Q9HB58 689 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 MRPL40Q9NQ50 206 aaKnown RBP14.7□□□□□ -0.06
CPSF1-212ENST00000616140 HNRNPCL1O60812 293 aaKnown RBP14.7□□□□□ -0.06
CPSF1-212ENST00000616140 GLI1P08151 1106 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 STILQ15468 1287 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 KDM7AQ6ZMT4 941 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 TCRBV5S4A2TA0A5A2 114 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 DFFAO00273 331 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 SGPL1O95470 568 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 BRD2P25440 801 aaKnown RBP14.7□□□□□ -0.06
CPSF1-212ENST00000616140 SEZ6Q53EL9 994 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 MTHFD1LQ6UB35 978 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 NDUFAF2Q8N183 169 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 KIAA0895Q8NCT3 520 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 C1orf131Q8NDD1 294 aaKnown RBP14.7□□□□□ -0.06
CPSF1-212ENST00000616140 RBM46Q8TBY0 533 aaKnown RBP14.7□□□□□ -0.06
CPSF1-212ENST00000616140 MTBPQ96DY7 904 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 THTPAQ9BU02 230 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 UNC45AQ9H3U1 944 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 SMARCAD1Q9H4L7 1026 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 RSAD1Q9HA92 442 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 OLA1Q9NTK5 396 aaKnown RBP14.7□□□□□ -0.06
CPSF1-212ENST00000616140 PAK5Q9P286 719 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 POLIQ9UNA4 740 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 USP32Q8NFA0 1604 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 EXTL3O43909 919 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 SNRPAP09012 282 aaKnown RBP14.7□□□□□ -0.06
CPSF1-212ENST00000616140 MCF2P10911 925 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 COBLL1Q53SF7 1204 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 TEDDM1Q5T9Z0 273 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 ACAD10Q6JQN1 1059 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 ZNF677Q86XU0 584 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 NT5C1AQ9BXI3 368 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 PPCSQ9HAB8 311 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 SLC40A1Q9NP59 571 aa14.7□□□□□ -0.06
CPSF1-212ENST00000616140 C3orf70A6NLC5 250 aaPredicted RBP14.69□□□□□ -0.06
CPSF1-212ENST00000616140 ATXN8OSP0DMR3 200 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 SERPINB4P48594 390 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 RARS2Q5T160 578 aaKnown RBP14.69□□□□□ -0.06
CPSF1-212ENST00000616140 CYP4A22Q5TCH4 519 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 FAM71DQ8N9W8 422 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 EPS8L3Q8TE67 593 aaKnown RBP14.69□□□□□ -0.06
CPSF1-212ENST00000616140 A0A087X0B3 334 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 ZSCAN5CA6NGD5 496 aaPredicted RBP14.69□□□□□ -0.06
CPSF1-212ENST00000616140 B2RBV5 119 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 E5RI56 91 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 ARP10275 920 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 SNRPFP62306 86 aaKnown RBP14.69□□□□□ -0.06
CPSF1-212ENST00000616140 CENPCQ03188 943 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 CAPRIN1Q14444 709 aaKnown RBP14.69□□□□□ -0.06
CPSF1-212ENST00000616140 VPS72Q15906 364 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 KYAT1Q16773 422 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms