RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 PDXDC1Q6P996 788 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 NLRP9Q7RTR0 991 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 PYROXD1Q8WU10 500 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 PHF12Q96QT6 1004 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 CADM1Q9BY67 442 aaKnown RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 VTA1Q9NP79 307 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 DISC1Q9NRI5 854 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 AASDHPPTQ9NRN7 309 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 EMILIN3Q9NT22 766 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 CNOT7Q9UIV1 285 aaKnown RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 SCAF8Q9UPN6 1271 aaKnown RBP10.8□□□□□ -0.68
VPS39-214ENST00000614932 WASF2Q9Y6W5 498 aa10.8□□□□□ -0.68
VPS39-214ENST00000614932 DDX60LQ5H9U9 1706 aaKnown RBP10.79□□□□□ -0.68
VPS39-214ENST00000614932 A0A088AWK7 358 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 TMEM120BA0PK00 339 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 NOTOA8MTQ0 251 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 CCDC188H7C350 402 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 GDF11O95390 407 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 PGM3O95394 542 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 TDP2O95551 362 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 PMS1P54277 932 aaKnown RBP10.79□□□□□ -0.68
VPS39-214ENST00000614932 AOC3Q16853 763 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 FIGNQ5HY92 759 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 WDR45BQ5MNZ6 344 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 APOBEC3HQ6NTF7 200 aaKnown RBP10.79□□□□□ -0.68
VPS39-214ENST00000614932 TMC4Q7Z404 712 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 MIPEPQ99797 713 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 PITPNM3Q9BZ71 974 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 EBF3Q9H4W6 596 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 GINM1Q9NU53 330 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 NAV1Q8NEY1 1877 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 DDTLA6NHG4 134 aaPredicted RBP10.79□□□□□ -0.68
VPS39-214ENST00000614932 USP17L10C9JJH3 530 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 PLCG1P19174 1290 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 PCSK6P29122 969 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 CRKP46108 304 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 TRAPPC10P48553 1259 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 KLK7P49862 253 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 CDC16Q13042 620 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 NONOQ15233 471 aaKnown RBP eCLIP10.79□□□□□ -0.68
VPS39-214ENST00000614932 LMBRD2Q68DH5 695 aaPredicted RBP10.79□□□□□ -0.68
VPS39-214ENST00000614932 MCF2L2Q86YR7 1114 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 CCDC125Q86Z20 511 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 EFHD2Q96C19 240 aaPredicted RBP10.79□□□□□ -0.68
VPS39-214ENST00000614932 DDX47Q9H0S4 455 aaKnown RBP10.79□□□□□ -0.68
VPS39-214ENST00000614932 RBM38Q9H0Z9 239 aaKnown RBP10.79□□□□□ -0.68
VPS39-214ENST00000614932 SLITRK6Q9H5Y7 841 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 C6orf50Q9HD87 102 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 MAGEC2Q9UBF1 373 aaPredicted RBP10.79□□□□□ -0.68
VPS39-214ENST00000614932 MAST2Q6P0Q8 1798 aa10.79□□□□□ -0.68
VPS39-214ENST00000614932 BRWD3Q6RI45 1802 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 DLEC1Q9Y238 1755 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 SLC26A4O43511 780 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 CNOT3O75175 753 aaKnown RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 MZF1P28698 734 aaPredicted RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 SHMT1P34896 483 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 LONP1P36776 959 aaKnown RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 AUHQ13825 339 aaKnown RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 SLC29A2Q14542 456 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 FAM20CQ8IXL6 584 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 REXO1Q8N1G1 1221 aaKnown RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 MAGEB18Q96M61 343 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 NT5C3AQ9H0P0 336 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 NLRC4Q9NPP4 1024 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 UVRAGQ9P2Y5 699 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 ZMAT5Q9UDW3 170 aaKnown RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 AMACRQ9UHK6 382 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 TRAF3IP3Q9Y228 551 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 ADAMTSL1Q8N6G6 1762 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 LOC105371267A0A1B0GV96 52 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 KLRG2A4D1S0 409 aaPredicted RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 ANKRD34BA5PLL1 514 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 POTEMA6NI47 508 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 A8MXQ7 604 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 SLC37A4O43826 429 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 PPP1R11O60927 126 aaPredicted RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 PARNO95453 639 aaKnown RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 PABPC1P11940 636 aaKnown RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 ENPP1P22413 925 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 GNA11P29992 359 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 CTAG1AP78358 180 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 WASHC5Q12768 1159 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 ASPHQ12797 758 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 SUZ12Q15022 739 aaKnown RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 FYB2Q5VWT5 728 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 KAZNQ674X7 775 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 ADGRF4Q8IZF3 695 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 GOLM1Q8NBJ4 401 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 ZFP28Q8NHY6 868 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 ACTRT1Q8TDG2 376 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 EPS8L3Q8TE67 593 aaKnown RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 SPZ1Q9BXG8 430 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 SAR1AQ9NR31 198 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 SH3GLB2Q9NR46 395 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 THEGQ9P2T0 379 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 DBR1Q9UK59 544 aaKnown RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 PACSIN2Q9UNF0 486 aaPredicted RBP10.78□□□□□ -0.68
VPS39-214ENST00000614932 SATB2Q9UPW6 733 aa10.78□□□□□ -0.68
VPS39-214ENST00000614932 TMEM114B3SHH9 223 aa10.77□□□□□ -0.68
VPS39-214ENST00000614932 KCNK3O14649 394 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms