RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 KIAA0100Q14667 2235 aaKnown RBP16.34■□□□□ 0.21
TRIM28-209ENST00000597423 AKR1B10O60218 316 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 EVI5O60447 810 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 CSF2RAP15509 400 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 MSNP26038 577 aaKnown RBP16.33■□□□□ 0.2
TRIM28-209ENST00000597423 GUCY2FP51841 1108 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 SPA17Q15506 151 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 WDR59Q6PJI9 974 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 DCLRE1AQ6PJP8 1040 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 DPH6Q7L8W6 267 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 IRF2BP2Q7Z5L9 587 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 ZSCAN30Q86W11 494 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 TXLNBQ8N3L3 684 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 CXCL16Q9H2A7 254 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 KCNF1Q9H3M0 494 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 LUC7LQ9NQ29 371 aaKnown RBP16.33■□□□□ 0.2
TRIM28-209ENST00000597423 MIOSQ9NXC5 875 aa16.33■□□□□ 0.2
TRIM28-209ENST00000597423 EPN1Q9Y6I3 576 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-209ENST00000597423 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.32■□□□□ 0.2
TRIM28-209ENST00000597423 KPNA7A9QM74 516 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 PODXLO00592 558 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 HUS1O60921 280 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 KRT83P78385 493 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 FPGSQ05932 587 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 MAPK8IP2Q13387 824 aaPredicted RBP16.32■□□□□ 0.2
TRIM28-209ENST00000597423 TMEM139Q8IV31 216 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 KAT5Q92993 513 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 ABHD8Q96I13 439 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 CHP1Q99653 195 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 BCO2Q9BYV7 579 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 GPR88Q9GZN0 384 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 CISHQ9NSE2 258 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 GDAP2Q9NXN4 497 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 AJAP1Q9UKB5 411 aaPredicted RBP16.32■□□□□ 0.2
TRIM28-209ENST00000597423 CNTN6Q9UQ52 1028 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 SNX9Q9Y5X1 595 aa16.32■□□□□ 0.2
TRIM28-209ENST00000597423 CARNS1A5YM72 827 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 CYP26A1O43174 497 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 ZSCAN12O43309 604 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 FGBP02675 491 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 FGFR1P11362 822 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 TNFAIP3P21580 790 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 EIF4A3P38919 411 aaKnown RBP16.31■□□□□ 0.2
TRIM28-209ENST00000597423 ASPAP45381 313 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 LILRA4P59901 499 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 SOX4Q06945 474 aaPredicted RBP16.31■□□□□ 0.2
TRIM28-209ENST00000597423 CLLU1OSQ5K130 101 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 ZNF677Q86XU0 584 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 C7orf61Q8IZ16 206 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 APPL2Q8NEU8 664 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 DPF3Q92784 378 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 LBHD1Q9BQE6 289 aaPredicted RBP16.31■□□□□ 0.2
TRIM28-209ENST00000597423 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.31■□□□□ 0.2
TRIM28-209ENST00000597423 HAUS4Q9H6D7 363 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 RNF19AQ9NV58 838 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 KIAA1257Q9ULG3 409 aa16.31■□□□□ 0.2
TRIM28-209ENST00000597423 SOWAHDA6NJG2 315 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 EIF3CLB5ME19 914 aaKnown RBP16.3■□□□□ 0.2
TRIM28-209ENST00000597423 ALDH2P05091 517 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 WEE2P0C1S8 567 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 ACO1P21399 889 aaKnown RBP16.3■□□□□ 0.2
TRIM28-209ENST00000597423 ITGB8P26012 769 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 PDE6CP51160 858 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 CLCNKBP51801 687 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 NAB2Q15742 525 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 UPP1Q16831 310 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 C10orf76Q5T2E6 689 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 TMEM270Q6UE05 265 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 DSTYKQ6XUX3 929 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 TOP6BLQ8N6T0 577 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 TOP1MTQ969P6 601 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 EIF3CQ99613 913 aaKnown RBP16.3■□□□□ 0.2
TRIM28-209ENST00000597423 COLEC11Q9BWP8 271 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 SNX25Q9H3E2 840 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 ARHGAP20Q9P2F6 1191 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 POLIQ9UNA4 740 aa16.3■□□□□ 0.2
TRIM28-209ENST00000597423 CASTOR2A6NHX0 329 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 CCDC85CA6NKD9 419 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 TBKBP1A7MCY6 615 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 MED7O43513 233 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 TRAPPC3O43617 180 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 TACC1O75410 805 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 B3GAT3O94766 335 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 UPP2O95045 317 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 NDUFA10O95299 355 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 PAEPP09466 180 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 CCDC175P0C221 793 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 CD58P19256 250 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 CLCN1P35523 988 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 AFF1P51825 1210 aaKnown RBP16.29■□□□□ 0.2
TRIM28-209ENST00000597423 BMS1Q14692 1282 aaKnown RBP16.29■□□□□ 0.2
TRIM28-209ENST00000597423 TCTN1Q2MV58 587 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 HGSNATQ68CP4 663 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 PSRC1Q6PGN9 363 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-209ENST00000597423 SCARA5Q6ZMJ2 495 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.29■□□□□ 0.25e-10■□□□□ 10.1
TRIM28-209ENST00000597423 UNC93AQ86WB7 457 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 METTL23Q86XA0 190 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 CRIPAKQ8N1N5 446 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 TMEM86AQ8N2M4 240 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms