RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 RMI1Q9H9A7 625 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 PPARGC1AQ9UBK2 798 aaKnown RBP10.13□□□□□ -0.79
CCDC40-212ENST00000574799 ARID2Q68CP9 1835 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 POLR2AP24928 1970 aaKnown RBP10.13□□□□□ -0.79
CCDC40-212ENST00000574799 B2RBV5 119 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 H3BRJ5 948 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 EXOC3O60645 756 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 ENTPD3O75355 529 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 GH2P01242 217 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 NR3C1P04150 777 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 BCRP11274 1271 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 CHKAP35790 457 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 YARSP54577 528 aaKnown RBP10.13□□□□□ -0.79
CCDC40-212ENST00000574799 NPEPPSP55786 919 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 DGKZQ13574 1117 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 STAT4Q14765 748 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 LIN52Q52LA3 116 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 OR52E8Q6IFG1 317 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 LVRNQ6Q4G3 990 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 PPP4R3CPQ6ZMV5 832 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 RGS9BPQ6ZS82 235 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 CYFIP1Q7L576 1253 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 SESTD1Q86VW0 696 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 SFR1Q86XK3 245 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 SLC13A5Q86YT5 568 aaPredicted RBP10.13□□□□□ -0.79
CCDC40-212ENST00000574799 ERMNQ8TAM6 284 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 CYP2W1Q8TAV3 490 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 RBM46Q8TBY0 533 aaKnown RBP10.13□□□□□ -0.79
CCDC40-212ENST00000574799 ZNF653Q96CK0 615 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 CCDC97Q96F63 343 aaPredicted RBP10.13□□□□□ -0.79
CCDC40-212ENST00000574799 TEPSINQ96N21 525 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 SGIP1Q9BQI5 828 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 ASCC2Q9H1I8 757 aaPredicted RBP10.13□□□□□ -0.79
CCDC40-212ENST00000574799 TTC7AQ9ULT0 858 aaPredicted RBP10.13□□□□□ -0.79
CCDC40-212ENST00000574799 TMCO1Q9UM00 188 aa10.13□□□□□ -0.79
CCDC40-212ENST00000574799 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.13□□□□□ -0.79
CCDC40-212ENST00000574799 KDM3AQ9Y4C1 1321 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 SFI1A8K8P3 1242 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 HNRNPCL1O60812 293 aaKnown RBP10.12□□□□□ -0.79
CCDC40-212ENST00000574799 ZBED4O75132 1171 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 TBX10O75333 385 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 RAD17O75943 681 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 ENO1P06733 434 aaKnown RBP10.12□□□□□ -0.79
CCDC40-212ENST00000574799 RTP1P59025 263 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 CYP4A11Q02928 519 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 PDE1CQ14123 709 aaPredicted RBP10.12□□□□□ -0.79
CCDC40-212ENST00000574799 R3HDM1Q15032 1099 aaKnown RBP10.12□□□□□ -0.79
CCDC40-212ENST00000574799 SPDYE2Q495Y8 402 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 ACSBG2Q5FVE4 666 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 ARSHQ5FYA8 562 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 GPATCH4Q5T3I0 446 aaKnown RBP10.12□□□□□ -0.79
CCDC40-212ENST00000574799 SLC30A10Q6XR72 485 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 TRMT1LQ7Z2T5 733 aaKnown RBP10.12□□□□□ -0.79
CCDC40-212ENST00000574799 SLC25A41Q8N5S1 370 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 PTPRN2Q92932 1015 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 PLEKHG4BQ96PX9 1271 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 BTBD10Q9BSF8 475 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 ETNK2Q9NVF9 386 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 ANKFY1Q9P2R3 1169 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 DNM3Q9UQ16 869 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 USP20Q9Y2K6 914 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 STARD13Q9Y3M8 1113 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 WASF2Q9Y6W5 498 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 ASTN2O75129 1339 aaPredicted RBP10.12□□□□□ -0.79
CCDC40-212ENST00000574799 OAS1P00973 400 aaKnown RBP10.12□□□□□ -0.79
CCDC40-212ENST00000574799 ITIH2P19823 946 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 ZNF76P36508 570 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 BTKQ06187 659 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 CCDC15Q0P6D6 951 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 ORC2Q13416 577 aaPredicted RBP10.12□□□□□ -0.79
CCDC40-212ENST00000574799 KNOP1Q1ED39 458 aaKnown RBP10.12□□□□□ -0.79
CCDC40-212ENST00000574799 PHC3Q8NDX5 983 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 PPP1R14CQ8TAE6 165 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 DCAF4Q8WV16 495 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 SCFD1Q8WVM8 642 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 TTC17Q96AE7 1141 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 BTBD6Q96KE9 485 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 IWS1Q96ST2 819 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 KLF6Q99612 283 aaPredicted RBP10.12□□□□□ -0.79
CCDC40-212ENST00000574799 ZSWIM1Q9BR11 485 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 TIPINQ9BVW5 301 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 SPATA16Q9BXB7 569 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 TMEM39BQ9GZU3 492 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 ZNF70Q9UC06 446 aaPredicted RBP10.12□□□□□ -0.79
CCDC40-212ENST00000574799 USTQ9Y2C2 406 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 COMMD3-BMI1R4GMX3 469 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 KIAA1217Q5T5P2 1943 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 A0A0G2JMZ2 1700 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 LRRC37A2A6NM11 1700 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 IGLV3-22A0A075B6J6 115 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 TRPA1O75762 1119 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 TRIM49P0CI25 452 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 TRIM49CP0CI26 452 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 PYGMP11217 842 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 CTNNA2P26232 953 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 CASP4P49662 377 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 GPC5P78333 572 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 IKQ13123 557 aaPredicted RBP10.12□□□□□ -0.79
CCDC40-212ENST00000574799 MMEL1Q495T6 779 aa10.12□□□□□ -0.79
CCDC40-212ENST00000574799 SLC44A4Q53GD3 710 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms