RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CEP135Q66GS9 1140 aa22.25■■□□□ 1.15
VPS53-210ENST00000571456 JADE1Q6IE81 842 aa22.25■■□□□ 1.15
VPS53-210ENST00000571456 KLHL10Q6JEL2 608 aa22.25■■□□□ 1.15
VPS53-210ENST00000571456 TTI2Q6NXR4 508 aa22.25■■□□□ 1.15
VPS53-210ENST00000571456 KLHL23Q8NBE8 558 aa22.25■■□□□ 1.15
VPS53-210ENST00000571456 ANKRD36BP1Q96IX9 119 aa22.25■■□□□ 1.15
VPS53-210ENST00000571456 METTL14Q9HCE5 456 aaKnown RBP22.25■■□□□ 1.15
VPS53-210ENST00000571456 CTNND2Q9UQB3 1225 aa22.25■■□□□ 1.15
VPS53-210ENST00000571456 CACNA1GO43497 2377 aa22.24■■□□□ 1.15
VPS53-210ENST00000571456 IKBKBO14920 756 aa22.24■■□□□ 1.15
VPS53-210ENST00000571456 TRAPPC3O43617 180 aa22.24■■□□□ 1.15
VPS53-210ENST00000571456 PDGFBP01127 241 aaPredicted RBP22.24■■□□□ 1.15
VPS53-210ENST00000571456 CLDN10P78369 228 aa22.24■■□□□ 1.15
VPS53-210ENST00000571456 NFKBIBQ15653 356 aa22.24■■□□□ 1.15
VPS53-210ENST00000571456 UPP1Q16831 310 aa22.24■■□□□ 1.15
VPS53-210ENST00000571456 DUOXA2Q1HG44 320 aa22.24■■□□□ 1.15
VPS53-210ENST00000571456 FILIP1Q7Z7B0 1213 aa22.24■■□□□ 1.15
VPS53-210ENST00000571456 DDX53Q86TM3 631 aaKnown RBP22.24■■□□□ 1.15
VPS53-210ENST00000571456 GPR65Q8IYL9 337 aa22.24■■□□□ 1.15
VPS53-210ENST00000571456 FAM186BQ8IYM0 893 aa22.24■■□□□ 1.15
VPS53-210ENST00000571456 RDH13Q8NBN7 331 aa22.24■■□□□ 1.15
VPS53-210ENST00000571456 RIPOR3Q96MK2 946 aa22.24■■□□□ 1.15
VPS53-210ENST00000571456 ARHGEF37A1IGU5 675 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 STX10O60499 249 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 TNNC2P02585 160 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 TMEM191BP0C7N4 346 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 PRKCSHP14314 528 aaPredicted RBP22.23■■□□□ 1.15
VPS53-210ENST00000571456 PNPLA4P41247 253 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 DPCR1Q3MIW9 517 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 ADGRD2Q7Z7M1 963 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 CSGALNACT2Q8N6G5 542 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 ZSWIM2Q8NEG5 633 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 PARD3BQ8TEW8 1205 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 CGRRF1Q99675 332 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 NAT10Q9H0A0 1025 aaKnown RBP22.23■■□□□ 1.15
VPS53-210ENST00000571456 PDE11AQ9HCR9 933 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 INTS13Q9NVM9 706 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 ADAM28Q9UKQ2 775 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 ITGA11Q9UKX5 1188 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 SSX2IPQ9Y2D8 614 aa22.23■■□□□ 1.15
VPS53-210ENST00000571456 R3HCC1Q9Y3T6 440 aaKnown RBP22.23■■□□□ 1.15
VPS53-210ENST00000571456 CASTOR2A6NHX0 329 aa22.22■■□□□ 1.15
VPS53-210ENST00000571456 PODXLO00592 558 aa22.22■■□□□ 1.15
VPS53-210ENST00000571456 AKAP3O75969 853 aa22.22■■□□□ 1.15
VPS53-210ENST00000571456 ITGB1P05556 798 aa22.22■■□□□ 1.15
VPS53-210ENST00000571456 NFICP08651 508 aa22.22■■□□□ 1.15
VPS53-210ENST00000571456 TNNI1P19237 187 aa22.22■■□□□ 1.15
VPS53-210ENST00000571456 PMS1P54277 932 aaKnown RBP22.22■■□□□ 1.15
VPS53-210ENST00000571456 FRMD5Q7Z6J6 570 aa22.22■■□□□ 1.15
VPS53-210ENST00000571456 NKD2Q969F2 451 aaPredicted RBP22.22■■□□□ 1.15
VPS53-210ENST00000571456 CXCL16Q9H2A7 254 aa22.22■■□□□ 1.15
VPS53-210ENST00000571456 DPP3Q9NY33 737 aa22.22■■□□□ 1.15
VPS53-210ENST00000571456 HCSTQ9UBK5 93 aa22.22■■□□□ 1.15
VPS53-210ENST00000571456 BARX2Q9UMQ3 279 aaPredicted RBP22.22■■□□□ 1.15
VPS53-210ENST00000571456 SF3B1O75533 1304 aaKnown RBP eCLIP22.22■■□□□ 1.15
VPS53-210ENST00000571456 PLXNA4Q9HCM2 1894 aa22.22■■□□□ 1.15
VPS53-210ENST00000571456 TRIM49BA6NDI0 452 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 B4GALT3O60512 393 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 TADA2AO75478 443 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 B3GAT3O94766 335 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 GLP2RO95838 553 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 CCDC192P0DO97 292 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 DNAJB1P25685 340 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 GTF2H1P32780 548 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 NRIP1P48552 1158 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 CASP4P49662 377 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 CLCNKBP51801 687 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 TFAMQ00059 246 aaKnown RBP22.21■■□□□ 1.15
VPS53-210ENST00000571456 SOX4Q06945 474 aaPredicted RBP22.21■■□□□ 1.15
VPS53-210ENST00000571456 BFSP1Q12934 665 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 EFCAB13Q8IY85 973 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 SPPL3Q8TCT6 385 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 ZNF560Q96MR9 790 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 NGRNQ9NPE2 291 aaKnown RBP22.21■■□□□ 1.15
VPS53-210ENST00000571456 MARCH5Q9NX47 278 aa22.21■■□□□ 1.15
VPS53-210ENST00000571456 PRG3Q9Y2Y8 225 aaPredicted RBP22.21■■□□□ 1.15
VPS53-210ENST00000571456 KMT2BQ9UMN6 2715 aaPredicted RBP22.2■■□□□ 1.14
VPS53-210ENST00000571456 ANO9A1A5B4 782 aa22.2■■□□□ 1.14
VPS53-210ENST00000571456 FSD2A1L4K1 749 aa22.2■■□□□ 1.14
VPS53-210ENST00000571456 CAVIN2O95810 425 aa22.2■■□□□ 1.14
VPS53-210ENST00000571456 DLATP10515 647 aaKnown RBP22.2■■□□□ 1.14
VPS53-210ENST00000571456 VAMP7P51809 220 aa22.2■■□□□ 1.14
VPS53-210ENST00000571456 MARSP56192 900 aaKnown RBP22.2■■□□□ 1.14
VPS53-210ENST00000571456 PDXDC1Q6P996 788 aa22.2■■□□□ 1.14
VPS53-210ENST00000571456 FAM114A1Q8IWE2 563 aa22.2■■□□□ 1.14
VPS53-210ENST00000571456 LRRC52Q8N7C0 313 aa22.2■■□□□ 1.14
VPS53-210ENST00000571456 C18orf25Q96B23 403 aaPredicted RBP22.2■■□□□ 1.14
VPS53-210ENST00000571456 CCDC127Q96BQ5 260 aa22.2■■□□□ 1.14
VPS53-210ENST00000571456 DUSP9Q99956 384 aaKnown RBP22.2■■□□□ 1.14
VPS53-210ENST00000571456 TUBGCP4Q9UGJ1 667 aa22.2■■□□□ 1.14
VPS53-210ENST00000571456 ARMCX3Q9UH62 379 aaPredicted RBP22.2■■□□□ 1.14
VPS53-210ENST00000571456 NUB1Q9Y5A7 615 aa22.2■■□□□ 1.14
VPS53-210ENST00000571456 DNAH14Q0VDD8 3507 aa22.2■■□□□ 1.14
VPS53-210ENST00000571456 PIRO00625 290 aa22.19■■□□□ 1.14
VPS53-210ENST00000571456 EFEMP2O95967 443 aa22.19■■□□□ 1.14
VPS53-210ENST00000571456 SOD2P04179 222 aa22.19■■□□□ 1.14
VPS53-210ENST00000571456 RBP5P82980 135 aa22.19■■□□□ 1.14
VPS53-210ENST00000571456 SPAG1Q07617 926 aa22.19■■□□□ 1.14
VPS53-210ENST00000571456 TPD52L1Q16890 204 aaPredicted RBP22.19■■□□□ 1.14
VPS53-210ENST00000571456 FUT10Q6P4F1 479 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms