RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ZNF396Q96N95 335 aaPredicted RBP16.14■□□□□ 0.17
CLN3-213ENST00000565047 TNMDQ9H2S6 317 aa16.14■□□□□ 0.17
CLN3-213ENST00000565047 WNT16Q9UBV4 365 aa16.14■□□□□ 0.17
CLN3-213ENST00000565047 MAFFQ9ULX9 164 aa16.14■□□□□ 0.17
CLN3-213ENST00000565047 TIMM13Q9Y5L4 95 aaPredicted RBP16.14■□□□□ 0.17
CLN3-213ENST00000565047 GTF3C3Q9Y5Q9 886 aa16.14■□□□□ 0.17
CLN3-213ENST00000565047 NUMBLQ9Y6R0 609 aa16.14■□□□□ 0.17
CLN3-213ENST00000565047 XPOTO43592 962 aaKnown RBP16.13■□□□□ 0.17
CLN3-213ENST00000565047 CUTAO60888 179 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 SRFP11831 508 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 TYMPP19971 482 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 HOXD13P35453 343 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 CLCN5P51795 746 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 YWHAHQ04917 246 aaPredicted RBP16.13■□□□□ 0.17
CLN3-213ENST00000565047 EHHADHQ08426 723 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 POSTNQ15063 836 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 PABPC1LQ4VXU2 614 aaKnown RBP16.13■□□□□ 0.17
CLN3-213ENST00000565047 PRSS36Q5K4E3 855 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 SCARA3Q6AZY7 606 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 ASTLQ6HA08 431 aaPredicted RBP16.13■□□□□ 0.17
CLN3-213ENST00000565047 ZNF280DQ6N043 979 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 HSCBQ8IWL3 235 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 NPAS3Q8IXF0 933 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 ST13P5Q8NFI4 369 aaPredicted RBP16.13■□□□□ 0.17
CLN3-213ENST00000565047 ACCSQ96QU6 501 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 PRRX2Q99811 253 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 OXCT2Q9BYC2 517 aaPredicted RBP16.13■□□□□ 0.17
CLN3-213ENST00000565047 TRIM9Q9C026 710 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 CRISPLD1Q9H336 500 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 SLC2A4RGQ9NR83 387 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 PANK4Q9NVE7 773 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 PCDHB13Q9Y5F0 798 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 INSL5Q9Y5Q6 135 aa16.13■□□□□ 0.17
CLN3-213ENST00000565047 PI15O43692 258 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 MOSPD3O75425 235 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 GCNT3O95395 438 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 CYP11A1P05108 521 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 RHOP08100 348 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 IDEP14735 1019 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 GARTP22102 1010 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 PAX3P23760 479 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 CCR2P41597 374 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 ARPP19P56211 112 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 ADCY1Q08828 1119 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 TMEM132DQ14C87 1099 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 FOXD4L5Q5VV16 416 aaPredicted RBP16.12■□□□□ 0.17
CLN3-213ENST00000565047 FOXD4L4Q8WXT5 416 aaPredicted RBP16.12■□□□□ 0.17
CLN3-213ENST00000565047 POMGNT1Q8WZA1 660 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 HPS3Q969F9 1004 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 FAM212AQ96EL1 285 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 SENP8Q96LD8 212 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 PHOX2BQ99453 314 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 RTP3Q9BQQ7 232 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 CYP4F11Q9HBI6 524 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 CEP72Q9P209 647 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 POLIQ9UNA4 740 aa16.12■□□□□ 0.17
CLN3-213ENST00000565047 MICAL2O94851 1124 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 CFHP08603 1231 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 OR4Q2P0C623 313 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 PTPN2P17706 415 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 EPHA5P54756 1037 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 GPR17Q13304 367 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 ALCAMQ13740 583 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 ATL3Q6DD88 541 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 EPM2AIP1Q7L775 607 aaPredicted RBP16.11■□□□□ 0.17
CLN3-213ENST00000565047 SIX5Q8N196 739 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 TMEM209Q96SK2 561 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 C7orf25Q9BPX7 421 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 CBWD1Q9BRT8 395 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 LRRC3Q9BY71 257 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 CUEDC2Q9H467 287 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 RCOR1Q9UKL0 485 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 PCDHA7Q9UN72 937 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 EXOC7Q9UPT5 735 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 ZDHHC9Q9Y397 364 aa16.11■□□□□ 0.17
CLN3-213ENST00000565047 TSC2P49815 1807 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 OR6C75A6NL08 312 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 PRRG1O14668 218 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 GALR2O43603 387 aaPredicted RBP16.1■□□□□ 0.17
CLN3-213ENST00000565047 PRPF6O94906 941 aaKnown RBP16.1■□□□□ 0.17
CLN3-213ENST00000565047 AOC1P19801 751 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 ELF1P32519 619 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 PTPN5P54829 565 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 GPC5P78333 572 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 MYBPC2Q14324 1141 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 DSTYKQ6XUX3 929 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 NT5DC4Q86YG4 428 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 BRSK2Q8IWQ3 736 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 OR10T2Q8NGX3 314 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 KCNG4Q8TDN1 519 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 GPR152Q8TDT2 470 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 DHX58Q96C10 678 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 TCEAL4Q96EI5 215 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 SAAL1Q96ER3 474 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 FAM213AQ9BRX8 229 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 DNAJC25Q9H1X3 360 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 DPP3Q9NY33 737 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 GDE1Q9NZC3 331 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 SCN1AP35498 2009 aa16.1■□□□□ 0.17
CLN3-213ENST00000565047 IL18RAPO95256 599 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms