RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 MAPK13O15264 365 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 KRT37O76014 449 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 ITGB3P05106 788 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 CYP3A4P08684 503 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 SUPT20HL2P0C7V6 817 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 CALRP27797 417 aaKnown RBP16.54■□□□□ 0.24
CUX1-211ENST00000546411 ARPP19P56211 112 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 TATDN1Q6P1N9 297 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 LRRC34Q8IZ02 419 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 LRRC37A3O60309 1634 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 ROBO3Q96MS0 1386 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 KCNN4O15554 427 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 RARAP10276 462 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 PEX19P40855 299 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 CORO7P57737 925 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 PTENP60484 403 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 MXD4Q14582 209 aaPredicted RBP16.54■□□□□ 0.24
CUX1-211ENST00000546411 RWDD4Q6NW29 188 aaKnown RBP16.54■□□□□ 0.24
CUX1-211ENST00000546411 KDM7AQ6ZMT4 941 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 PDZD4Q76G19 769 aaPredicted RBP16.54■□□□□ 0.24
CUX1-211ENST00000546411 MCUQ8NE86 351 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 SPATA18Q8TC71 538 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 KIAA1683Q9H0B3 1180 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 PPARGC1AQ9UBK2 798 aaKnown RBP16.54■□□□□ 0.24
CUX1-211ENST00000546411 VAV3Q9UKW4 847 aa16.54■□□□□ 0.24
CUX1-211ENST00000546411 M0R2N6 131 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 MYL3P08590 195 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 ESRRAP11474 423 aaPredicted RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 RAP1GAPP47736 663 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 ROR1Q01973 937 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 UGCGQ16739 394 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 LY6KQ17RY6 165 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 TTMPQ5BVD1 217 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 DSTYKQ6XUX3 929 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 CCDC60Q8IWA6 550 aaPredicted RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 FBXO16Q8IX29 292 aaPredicted RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 RCOR2Q8IZ40 523 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 EPS8L1Q8TE68 723 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 ACAP3Q96P50 834 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 RANBP17Q9H2T7 1088 aaKnown RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 CDC42EP4Q9H3Q1 356 aaKnown RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 BAZ2AQ9UIF9 1905 aaKnown RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 RPL21P46778 160 aaKnown RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 LLGL2Q6P1M3 1020 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 TRMT10CQ7L0Y3 403 aaKnown RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 PALB2Q86YC2 1186 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 ATP11CQ8NB49 1132 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 DYNC1LI2O43237 492 aaPredicted RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 SESN2P58004 480 aaPredicted RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 IFI35P80217 286 aaPredicted RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 ZNF844Q08AG5 666 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 DNAJC3Q13217 504 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 AGBL2Q5U5Z8 902 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 FAM71DQ8N9W8 422 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 AGAP3Q96P47 875 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 INPP4AQ96PE3 977 aaPredicted RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 A1CFQ9NQ94 594 aaKnown RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 METTL5Q9NRN9 209 aaKnown RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 KLC4Q9NSK0 619 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 KLHL8Q9P2G9 620 aaPredicted RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 SSX2IPQ9Y2D8 614 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 A0A0A6YYK5 440 aaPredicted RBP16.53■□□□□ 0.24
CUX1-211ENST00000546411 HUS1O60921 280 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 CRCPO75575 148 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 RARBP10826 455 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 C3orf62Q6ZUJ4 267 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 TMEM121Q9BTD3 319 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 RNF19AQ9NV58 838 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 PNMA3Q9UL41 463 aa16.53■□□□□ 0.24
CUX1-211ENST00000546411 CFAP69A5D8W1 941 aa16.52■□□□□ 0.24
CUX1-211ENST00000546411 PEX10O60683 326 aa16.52■□□□□ 0.24
CUX1-211ENST00000546411 SPATA21Q7Z572 469 aa16.52■□□□□ 0.24
CUX1-211ENST00000546411 TMC3Q7Z5M5 1100 aa16.52■□□□□ 0.24
CUX1-211ENST00000546411 DDX23Q9BUQ8 820 aaKnown RBP16.52■□□□□ 0.24
CUX1-211ENST00000546411 ECT2Q9H8V3 914 aa16.52■□□□□ 0.24
CUX1-211ENST00000546411 ARFGEF2Q9Y6D5 1785 aa16.52■□□□□ 0.24
CUX1-211ENST00000546411 PRKCIP41743 596 aa16.52■□□□□ 0.24
CUX1-211ENST00000546411 TNFAIP2Q03169 654 aa16.52■□□□□ 0.24
CUX1-211ENST00000546411 ITGB3BPQ13352 177 aaPredicted RBP16.52■□□□□ 0.24
CUX1-211ENST00000546411 STAT4Q14765 748 aa16.52■□□□□ 0.24
CUX1-211ENST00000546411 TTC25Q96NG3 672 aa16.52■□□□□ 0.24
CUX1-211ENST00000546411 TRIM55Q9BYV6 548 aa16.52■□□□□ 0.24
CUX1-211ENST00000546411 C17orf75Q9HAS0 396 aa16.52■□□□□ 0.24
CUX1-211ENST00000546411 TXLNGQ9NUQ3 528 aa16.52■□□□□ 0.24
CUX1-211ENST00000546411 YDJCA8MPS7 323 aa16.52■□□□□ 0.23
CUX1-211ENST00000546411 NCF2P19878 526 aaPredicted RBP16.52■□□□□ 0.23
CUX1-211ENST00000546411 AGR3Q8TD06 166 aa16.52■□□□□ 0.23
CUX1-211ENST00000546411 PPP1R13LQ8WUF5 828 aa16.52■□□□□ 0.23
CUX1-211ENST00000546411 VPS11Q9H270 941 aa16.52■□□□□ 0.23
CUX1-211ENST00000546411 SMARCAD1Q9H4L7 1026 aa16.52■□□□□ 0.23
CUX1-211ENST00000546411 MARCOQ9UEW3 520 aaPredicted RBP16.52■□□□□ 0.23
CUX1-211ENST00000546411 E2F8A0AVK6 867 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 CHUKO15111 745 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 AP1B1Q10567 949 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 NSMCE1Q8WV22 266 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 ALG3Q92685 438 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 SIK2Q9H0K1 926 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 PIN4Q9Y237 131 aaKnown RBP16.51■□□□□ 0.23
CUX1-211ENST00000546411 LPXNO60711 386 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 MUTP22033 750 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms