RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 UBE4BO95155 1302 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 MTCL1Q9Y4B5 1905 aaKnown RBP12.52□□□□□ -0.4
RTN3-209ENST00000538995 ZNF318Q5VUA4 2279 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 OR6C75A6NL08 312 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 PIRO00625 290 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 CCL16O15467 120 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 POLR2DO15514 142 aaKnown RBP12.52□□□□□ -0.41
RTN3-209ENST00000538995 EXTL3O43909 919 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 ODC1P11926 461 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 LAMP2P13473 410 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 GUCY2FP51841 1108 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 LILRA4P59901 499 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 KRT85P78386 507 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 FAM26FQ5R3K3 315 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 DSTYKQ6XUX3 929 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 UNC13DQ70J99 1090 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 GRASPQ7Z6J2 395 aaPredicted RBP12.52□□□□□ -0.41
RTN3-209ENST00000538995 USP37Q86T82 979 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 FAM213AQ9BRX8 229 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 IKZF4Q9H2S9 585 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 AVENQ9NQS1 362 aaPredicted RBP12.52□□□□□ -0.41
RTN3-209ENST00000538995 DSEQ9UL01 958 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 CDH7Q9ULB5 785 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 DUSP12Q9UNI6 340 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 ATP6V1DQ9Y5K8 247 aa12.52□□□□□ -0.41
RTN3-209ENST00000538995 PVALEFA0A1B0GWK0 134 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 ANHXE9PGG2 379 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 PRRG1O14668 218 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 PPEF2O14830 753 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 PRPF6O94906 941 aaKnown RBP12.51□□□□□ -0.41
RTN3-209ENST00000538995 LRG1P02750 347 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 CYP11A1P05108 521 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 CPB1P15086 417 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 PLA2G5P39877 138 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 EHHADHQ08426 723 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 MYBPC2Q14324 1141 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 PABPC1LQ4VXU2 614 aaKnown RBP12.51□□□□□ -0.41
RTN3-209ENST00000538995 OVOS1Q6IE37 1185 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 ARMCX5Q6P1M9 558 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 EPM2AIP1Q7L775 607 aaPredicted RBP12.51□□□□□ -0.41
RTN3-209ENST00000538995 EFCAB13Q8IY85 973 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 SENP8Q96LD8 212 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 ZNF560Q96MR9 790 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 PRRX2Q99811 253 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 CBWD1Q9BRT8 395 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 CYP4F11Q9HBI6 524 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 DPP3Q9NY33 737 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 RBAKQ9NYW8 714 aaPredicted RBP12.51□□□□□ -0.41
RTN3-209ENST00000538995 POLIQ9UNA4 740 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 INSL5Q9Y5Q6 135 aa12.51□□□□□ -0.41
RTN3-209ENST00000538995 SPTLC1O15269 473 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 SLFN14P0C7P3 912 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 PNPLA4P41247 253 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 TAF6P49848 677 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 NUBP1P53384 320 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 ARPP19P56211 112 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 SNRPFP62306 86 aaKnown RBP12.5□□□□□ -0.41
RTN3-209ENST00000538995 HTR4Q13639 388 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 CEP57L1Q8IYX8 460 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 GPD1LQ8N335 351 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 TMEM130Q8N3G9 435 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 LEO1Q8WVC0 666 aaPredicted RBP12.5□□□□□ -0.41
RTN3-209ENST00000538995 FGF13Q92913 245 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 SAAL1Q96ER3 474 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 KIAA1586Q9HCI6 787 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 DNMT3BQ9UBC3 853 aaKnown RBP12.5□□□□□ -0.41
RTN3-209ENST00000538995 USP25Q9UHP3 1055 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 ZDHHC9Q9Y397 364 aa12.5□□□□□ -0.41
RTN3-209ENST00000538995 MICAL2O94851 1124 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 SEC24AO95486 1093 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 MYL1P05976 194 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 RHOP08100 348 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 SRFP11831 508 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 CMA1P23946 247 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 NTHL1P78549 312 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 ADCY1Q08828 1119 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 GPR17Q13304 367 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 PLD1Q13393 1074 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 BECN1Q14457 450 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 SURF1Q15526 300 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 BMT2Q1RMZ1 405 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 SV2CQ496J9 727 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 MTSS1LQ765P7 747 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 ELMOD1Q8N336 334 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 LRRC52Q8N7C0 313 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 LEMD2Q8NC56 503 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 GLIS3Q8NEA6 775 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 ZNF507Q8TCN5 953 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 CACTINQ8WUQ7 758 aaKnown RBP12.49□□□□□ -0.41
RTN3-209ENST00000538995 FAM122AQ96E09 287 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 SPATA32Q96LK8 384 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 SCAND2PQ9GZW5 306 aaPredicted RBP12.49□□□□□ -0.41
RTN3-209ENST00000538995 SMOC2Q9H3U7 446 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 GDE1Q9NZC3 331 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 CGNQ9P2M7 1197 aaKnown RBP12.49□□□□□ -0.41
RTN3-209ENST00000538995 HSFX1Q9UBD0 423 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 ITGA11Q9UKX5 1188 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 TIMM13Q9Y5L4 95 aaPredicted RBP12.49□□□□□ -0.41
RTN3-209ENST00000538995 PIEZO1Q92508 2521 aa12.49□□□□□ -0.41
RTN3-209ENST00000538995 FAM237AA0A1B0GTK4 181 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms